Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0346 ATGGAAGAAAGTCCTGGTGGTCGCAGAAAGCGAGCACACCCTTCTTCTTCTTCTTCATCTCCTTCACCAATCTCCAAGAAGCCCCAAACCTTCCCTTCGTTCCAAGACATCCCCAACCTCCCTTCCAACATCAAATCCCTCTGCCATCTCATCGCCACCACCTCCGCCGCCTCCGTCGAGCACTCCCTCCAATCCGCCGCCATCTCCGTCACCCCCCACGACGTCGAAGAAGTCCTCAAACTCTCCTACGGCTTCCCCGGCCAGGCCGTCAAATTCTTCCGCTGGAGCGGCCGCCACCTAAACGACAACCACACGCCCTACTCCTGGAACCTCGTCGTTGACATCCTCGGCAAAAACCGCTTCTTTGACGCGATGTGGGACGCTATTAAGTCAATGAACAAAGAAGGGTTGCTCTCACTCGCCACATTCGCCTCTGTCTTCAGCAGCTATGTTGCAGCTGATAGAATCCGGGAAGCAATTATGGCATTCGAGATTATGGACAATTATTGTGTTGTGAGGGATGTTGTTGCTTTGAATTCGCTGTTGAGTGCTATTTGTAGCAATGGTAGGACTCTTGATGCTTGTGATTACTTGCAGGTTGCCAAGAAATTGGTCCGGCCGGATACCGATACTTATGCGATTTTAATGGAGGGGTGGGAAGGGGAGAATGGTGTAGTTGGTGCTAAGGAGACATTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTTTGAATGTGCCGGCTTATGATTCGTTCTTGTGTACACTTGTTAGAGGACCTGATGGATTGCTTGAGGCTATTAAGTTTGTTGATTCGATGAGGGATAGGAGGTGTTTTCCTGGTGTGAGGTTTCTGAAGGCTGCATTGGATGAGTGTGTTAAGAGTCATGATGTTAGGACTGCTGAGTTTTTCTGGGAGGTGTTGGTGGTTGGGAAGGTGGTGCAGCCCACCGCTGAGATGTACAATTTGATGATTGGTTTGTGCTGCTATCGTGGTGACACCGATGCTGCGAGGAGGATGCTTGATGAGATGGTTTACCAAGGGGCTTTTCCTGATGTGGAGACTTATAACTTGTTGTTTAAGTTCTTGATCAAGGGGAGGAAGTTGCGGGAGGCTTCCGTGGTGTTTGCAGAGATGGTGAAGAATGAGTGTGTGCCCGAGCAGGATAACTGTGATGCGGCGGTTAAGGCGTATGTGGACTGTGGGGAGCCTGTTATGGCCATCAAGGTTTGGAAGTATTTGGTGGAGAATTATAAGAAGGATTTGGAGCGGACAGCGAATTTTCTGGTTGTGGGGCTGCGTGATTTGAATAGGCTCCCGGAGGCGGTTAAGTATGCTGAGGATATGATTGACAGGGAAATCAGGTTGTCCTCTAACACAATGTCAAAGCTGAGACAAAGCCTTATCAAGGAGAGAAGAGAATTTGTGTATGAAGACCTTTTGAGAAAGTCTAAGTCTCATTAG 1464 0.4911 MEESPGGRRKRAHPSSSSSSPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAASVEHSLQSAAISVTPHDVEEVLKLSYGFPGQAVKFFRWSGRHLNDNHTPYSWNLVVDILGKNRFFDAMWDAIKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYCVVRDVVALNSLLSAICSNGRTLDACDYLQVAKKLVRPDTDTYAILMEGWEGENGVVGAKETFAEMVIEIGWDPLNVPAYDSFLCTLVRGPDGLLEAIKFVDSMRDRRCFPGVRFLKAALDECVKSHDVRTAEFFWEVLVVGKVVQPTAEMYNLMIGLCCYRGDTDAARRMLDEMVYQGAFPDVETYNLLFKFLIKGRKLREASVVFAEMVKNECVPEQDNCDAAVKAYVDCGEPVMAIKVWKYLVENYKKDLERTANFLVVGLRDLNRLPEAVKYAEDMIDREIRLSSNTMSKLRQSLIKERREFVYEDLLRKSKSH* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0346 487 PANTHER OS02G0711100 PROTEIN 14 486 - -
Gso18g0346 487 Pfam PPR repeat family 319 363 IPR002885 -
Gso18g0346 487 TIGRFAM PPR: pentatricopeptide repeat domain 320 352 IPR002885 -
Gso18g0346 487 TIGRFAM PPR: pentatricopeptide repeat domain 355 386 IPR002885 -
Gso18g0346 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Gso18g0346 487 MobiDBLite consensus disorder prediction 1 32 - -
Gso18g0346 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 14 486 - -
Gso18g0346 487 MobiDBLite consensus disorder prediction 11 32 - -
Gso18g0346 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Gso18g0346 487 Gene3D Tetratricopeptide repeat domain 81 239 IPR011990 GO:0005515
Gso18g0346 487 Pfam PPR repeat 107 137 IPR002885 -
Gso18g0346 487 Gene3D Tetratricopeptide repeat domain 369 487 IPR011990 GO:0005515
Gso18g0346 487 Gene3D Tetratricopeptide repeat domain 243 368 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0346 Gso-Chr18 3269715 3272213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0346 305 471 Glycosyltransferase AT1G05670 26.744 2.53e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0346 - - gmx:100784707 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0346 18 3269715 3272213 Gso13g1269 13 27975452 27977309 GST