Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1269 ATGGAAGAAAGCCCTCGTGGTCGCAGAAAGCGAGCACACCCTTCTTCTCCTTCTCCTCCTTCGCCAATCTCCAAGAAGCCCCAAACCTTCCCTTCGTTCCAAGACATCCCCAATCTCCCTTCTAACATCAAATCCCTCTGCCACCTCATCGCCACCACCTCCGCCGCCACCGTCGAGCACTCCCTCCAATCCGCCGCCATCTCCGTCATCCCTCACGACGTCGAAGAAGTCCTCAAACTCTCCTACGGCTGCCAATCCGTCAAATTCTTCCGCTGGAGCGGCCGCCACCTCAACGACAACCACACGCCCTATTCCTGGAACCTCGTTGTCGATATCCTCGGCAGAAACCGCTTCTTCGACCCCATGTGGGACGCCGTTAAGTCAATGAACAAAGAAGGGTTACTCTCGCTCGCCACATTCGCCTCCGTCTTCAGCAGCTATGTTGCCGCTGACAGAATCCGTGAAGCAATTATGGCGTTTGAGATTATGGACAATTACGGTTGTGTTGCTAAGAAATTCGTCCGACCGGATACGGATACTTACGCGATTTTAATGGAGGGGTGGGAAGGGGAGAAGAGTATGGTTAGTGCTAAGGAGACATTTGCTGAGATGGTGATTGAGATTGGATGGGATCCTGCGAATGTGCCGGCTTATGATTCGTTCTTGTGTACACTTGTTAGAGGGCATGATGGATTGCTTGAGGCTATTAAGTTTGTTGATTCCATGAGGGATAGGAGGTGTTACCCCGGTGTGAGGTTTCTGAAGGCTGCATTGGATGAGTGTGTTAAGTGCCATGATGTTAGGACAGCTGAGTTTTTCTGGGAGGTGTTGGTGGTTGGGAAGGTGTTGCAGCCCACCTCTGAGATGTACAATTTGATGATCGGTTTGTGTTGCTATCGCGGTGACACCGATGCTGCAAGGAGGATGCTCCATGAGATGGTTTACCAAGGGGCTTTTCCTGATGTGGTGACTTATAACTTGTTGTTTAAGTTCTTGCTCAAGGGGAGGAAACTGAGGGAGGCTTCGTCGGTGTTTGCGGAGATGGTGCAGAATGAGTGTGTGCCGGAGCAGGATAACTGTGATTTGGCAGTTAAGGTGTATGTGGATTGCGGGGAGCCTGTTATGGCGATCAAGGTTTGGAAGTGTTTGGTGGAGAATTATAAGAAGGGTTTGGAGCAGACCGCGAATTTTCTGGTTGTGGGGCTTTGCAATTTGAACAGGCCACAGGTGGCGGTTAAGTATGCCGAGGATATGATTGGCAGGGGAATCAGTTTGTCCTCTTCCACATTGTCGAAGCTGAGACAAAGCCTTGTCAAGGAGAGAAGAGAATATGTGTATGAGGATCTTTTGAGAAAGTGGAAATCTCACTAG 1371 0.5026 MEESPRGRRKRAHPSSPSPPSPISKKPQTFPSFQDIPNLPSNIKSLCHLIATTSAATVEHSLQSAAISVIPHDVEEVLKLSYGCQSVKFFRWSGRHLNDNHTPYSWNLVVDILGRNRFFDPMWDAVKSMNKEGLLSLATFASVFSSYVAADRIREAIMAFEIMDNYGCVAKKFVRPDTDTYAILMEGWEGEKSMVSAKETFAEMVIEIGWDPANVPAYDSFLCTLVRGHDGLLEAIKFVDSMRDRRCYPGVRFLKAALDECVKCHDVRTAEFFWEVLVVGKVLQPTSEMYNLMIGLCCYRGDTDAARRMLHEMVYQGAFPDVVTYNLLFKFLLKGRKLREASSVFAEMVQNECVPEQDNCDLAVKVYVDCGEPVMAIKVWKCLVENYKKGLEQTANFLVVGLCNLNRPQVAVKYAEDMIGRGISLSSSTLSKLRQSLVKERREYVYEDLLRKWKSH* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1269 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Gso13g1269 456 PANTHER OS02G0711100 PROTEIN 11 170 - -
Gso13g1269 456 PANTHER OS02G0711100 PROTEIN 170 455 - -
Gso13g1269 456 MobiDBLite consensus disorder prediction 1 31 - -
Gso13g1269 456 TIGRFAM PPR: pentatricopeptide repeat domain 323 355 IPR002885 -
Gso13g1269 456 TIGRFAM PPR: pentatricopeptide repeat domain 289 321 IPR002885 -
Gso13g1269 456 Pfam PPR repeat 139 168 IPR002885 -
Gso13g1269 456 Pfam PPR repeat family 286 332 IPR002885 -
Gso13g1269 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Gso13g1269 456 Gene3D Tetratricopeptide repeat domain 43 207 IPR011990 GO:0005515
Gso13g1269 456 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 11 170 - -
Gso13g1269 456 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 170 455 - -
Gso13g1269 456 Gene3D Tetratricopeptide repeat domain 213 399 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1269 Gso-Chr13 27975452 27977309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1269 138 442 Glycosyltransferase AT1G05670 23.453 6.15e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1269 - - gmx:100808606 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0346 18 3269715 3272213 Gso13g1269 13 27975452 27977309 GST