Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0329 ATGGAGGCGAAGAAATCGGGTTTGAATCTCCCAGCTGGGATGTCCGGAACCTCACTCCGGCTGGACACTGCAGCAGCATCTTCCATCTCGACCCTCAATTCTCCTTCTTCTCTCCGTTCCATCTCTAATCTCACCTCGCCTTCGAAATCCAACTCGGCTTGCAGCGACAGGTTCATTCCGTGCCGGTCCTCCTCGAGGTTGCACACGTTCGGGCTCCTGGACAGGCCCTCGCCGGTGAAGGAAGGGAGTAACGAGGCTTATTCCAGGTTGTTGAAATCAGAACTCTTTGGATCTGACTTTGCTTCTCCTTCTCTTTCTCTTTCTTCCCCTGCAGGTGCTGCTCCTCCTTCGCCGCTCAGCCCCAGCAAGAACATGCTCCGCTTCAAGACCGACCACTCCGTCGCGCCTTCTTCGCCTTATTCGCCGTCCATTTTGGGACAGCAGAATGCCTTTCCTTCTGACTCTTCTACCCCGCCTCCCAAACCTCCCAGGAAAGTCCTCAAGACGCCCCACAAGGTTTTGGATGCCCCATCACTTCAAGATGACTTTTATTTGAATCTGGTGGACTGGTCCACACAAAATGTTCTTGCTGTGGGGCTAGGCACTTGTGTGTATTTATGGAGCGCTTCAAACAGCAAAGTGACTAAGTTATGTGACTTGGGGCCTTATGATGGTGTCTGCTCTGTCCAGTGGACCCGGGAGGGTTCTTTTATATCCATTGGTACAAATCTTGGTCAAGTTCAGGTTTGGGATGGAACTCAGTGTAAGAAGGTCAGAACCATGGGTGGGCATCAGACAAGGACTGGTGTTTTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGCAGAGATAGGAACATACTTCAGCATGACATGAGGATTCCGGGTGACTTTGTTAGCAAGCTTGTTGGCCACAAGTCTGAGGTATGTGGATTGAAATGGTCCAGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCCTGGTATGGAATCAACACTCTCAGCAACCAGTTTTGAGACTTACCGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAAAGCAGTCTCCTTGTGTCCGGAGGTGGAACTGCTGATAGGTGTATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACTGTCTTGACACTGGGAGCCAGGTCTGCAACCTTGCTTGGAGTAAAAATGTGAATGAACTAGTAAGCACTCATGGGTACTCCCAAAATCAGATCATGGTGTGGAAATATCCATCATTGTCAAAGGTTGCAACTCTAACTGGCCACAGCATGCGAGTGCTATACCTTGCAATGTCTCCTGATGGCCAGACAATAGTAACTGGTGCAGGAGATGAGACTCTACGGTTTTGGAATGTTTTCCCATCAATGAAAGCACCTGTCCCGGTTAAAGATACAGGCCTTTGGTCACTGGGGCGCACACAAATTCGATGA 1470 0.4973 MEAKKSGLNLPAGMSGTSLRLDTAAASSISTLNSPSSLRSISNLTSPSKSNSACSDRFIPCRSSSRLHTFGLLDRPSPVKEGSNEAYSRLLKSELFGSDFASPSLSLSSPAGAAPPSPLSPSKNMLRFKTDHSVAPSSPYSPSILGQQNAFPSDSSTPPPKPPRKVLKTPHKVLDAPSLQDDFYLNLVDWSTQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRIPGDFVSKLVGHKSEVCGLKWSSDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQSSLLVSGGGTADRCIRFWNTTNGHQLNCLDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPVPVKDTGLWSLGRTQIR* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0329 489 CDD WD40 205 464 - -
Gso18g0329 489 Pfam Eukaryotic translation initiation factor eIF2A 322 462 IPR013979 -
Gso18g0329 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Gso18g0329 489 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 7 489 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gso18g0329 489 MobiDBLite consensus disorder prediction 134 154 - -
Gso18g0329 489 MobiDBLite consensus disorder prediction 132 168 - -
Gso18g0329 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 334 - -
Gso18g0329 489 PANTHER PROTEIN FIZZY-RELATED 3 7 489 - -
Gso18g0329 489 SUPERFAMILY WD40 repeat-like 165 465 IPR036322 GO:0005515
Gso18g0329 489 SMART WD40_4 425 464 IPR001680 GO:0005515
Gso18g0329 489 SMART WD40_4 295 334 IPR001680 GO:0005515
Gso18g0329 489 SMART WD40_4 254 291 IPR001680 GO:0005515
Gso18g0329 489 SMART WD40_4 211 251 IPR001680 GO:0005515
Gso18g0329 489 SMART WD40_4 337 379 IPR001680 GO:0005515
Gso18g0329 489 SMART WD40_4 382 422 IPR001680 GO:0005515
Gso18g0329 489 ProSitePatterns Trp-Asp (WD) repeats signature. 451 465 IPR019775 -
Gso18g0329 489 Gene3D - 123 466 IPR015943 GO:0005515
Gso18g0329 489 ProSitePatterns Trp-Asp (WD) repeats signature. 366 380 IPR019775 -
Gso18g0329 489 MobiDBLite consensus disorder prediction 29 55 - -
Gso18g0329 489 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 432 465 - -
Gso18g0329 489 ProSiteProfiles Trp-Asp (WD) repeats profile. 432 465 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0329 Gso-Chr18 3096293 3101700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0329 299 465 Miscellaneous Gene Families AT5G08390 22.159 3.73e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0329 K03364 - gmx:100808928 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0329 18 3096293 3101700 Gso18g0329 18 3096293 3101700 ECH
Gso18g0329 18 3096293 3101700 Gso13g1286 13 28207287 28211587 GST