Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1286 ATGGAATCCCCTCATGCGAAGAAATCGGGGGGTTTGAAGCTCCCAGCTGGCATGTCCGGAACCTCACTCCGCCTCGACACCGCGCCAGCATCTTCTTCTTTCCGTTCTTCCATCTCGACCCTCAATTCTCCTTCTTCTCTCCGCTCCATCTCTAACCTCACATCGCCTTCGAAATCGAACTCGGCCTGCAGCGACCGGTTCATCCCGTGCAGATCCTCCTCGAGGCTGCACACGTTCGGGCTCGTGGACAGGCCGTCGCCGGTGAAGGAAGGGAGTAACGAAGCGTATTCGAGGTTGTTGAAATCGGAACTCTTTGGATCTGACTTTGCTTCTCCTTCTCTTTCTTCTCTTTCTTCTCCTGCAGGTGCTGCTGCTCCTCCTTCGCCTCTCAGTCCCAGCAAGAACATGCTCCGCTTCAAGACCGATCACTCCGCCGCGCCTTCTTCTCCTTATTCACCGTCCATTTTGGGACAGCAGAATGGCTTCACTTCTGACTCTTCCACACCGCCTCCCAAACCTCCTAGAAAAGTCCCCAAGACACCCCACAAGGTTTTGGATGCACCATCACTTCAAGATGACTTTTATTTGAATCTGGTGGACTGGTCCACACAAAATGTTCTTGCAGTGGGGCTAGGCACTTGTGTTTATTTATGGAGCGCTTCAAACAGCAAAGTGACTAAGTTATGTGACTTGGGGCCTTATGATGGTGTTTGTTCTGTCCAGTGGACCCGGGAGGGTTCTTTTATATCAATTGGTACAAATCTTGGCCAAGTTCAGGTTTGGGATGGAACTCAGTGTAAGAAGGTCAGAACCATGGGTGGGCATCAGACAAGGACTGGTGTCTTGGCATGGAATTCTCGCATTTTGGCTTCAGGGAGCAGAGATAGGAACATACTTCAGCATGACATGAGGGTTCCAGGTGACTTTGTTAGCAAGCTTGTTGGTCACAAGTCTGAGGTATGTGGATTGAAATGGTCCTGTGATGACAGGGAACTTGCTTCTGGTGGTAATGATAATCAGCTCCTGGTATGGAATCAACACTCTCAGCAACCAGTTTTGAGACTTACCGAGCACACTGCTGCTGTGAAGGCCATTGCTTGGTCACCTCACCAAAGCAGTCTCCTTGTGTCTGGAGGTGGAACCGCTGATAGGTGCATTCGTTTTTGGAACACTACAAATGGCCATCAATTGAACTGTGTTGACACTGGGAGCCAGGTCTGCAACCTTGCTTGGAGTAAAAATGTGAATGAACTAGTAAGTACTCATGGGTACTCCCAAAATCAGATCATGGTGTGGAAATATCCATCATTGACAAAGGTTGCAACTCTAACTGGCCACAGCATGCGAGTGCTGTACCTTGCAATGTCTCCTGATGGTCAGACAATAGTAACTGGTGCAGGGGATGAGACTCTACGGTTTTGGAATGTTTTCCCATCAATGAAAGCACCGGCCCCCGTTAAAGATACAGGCCTTTGGTCACTGGGGCGCACACAAATTCGATGA 1503 0.4963 MESPHAKKSGGLKLPAGMSGTSLRLDTAPASSSFRSSISTLNSPSSLRSISNLTSPSKSNSACSDRFIPCRSSSRLHTFGLVDRPSPVKEGSNEAYSRLLKSELFGSDFASPSLSSLSSPAGAAAPPSPLSPSKNMLRFKTDHSAAPSSPYSPSILGQQNGFTSDSSTPPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSTQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPGDFVSKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQSSLLVSGGGTADRCIRFWNTTNGHQLNCVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLTKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDTGLWSLGRTQIR* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1286 500 ProSitePatterns Trp-Asp (WD) repeats signature. 462 476 IPR019775 -
Gso13g1286 500 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 10 500 IPR033010 GO:0010997|GO:0097027|GO:1904668
Gso13g1286 500 SMART WD40_4 396 433 IPR001680 GO:0005515
Gso13g1286 500 SMART WD40_4 222 262 IPR001680 GO:0005515
Gso13g1286 500 SMART WD40_4 306 345 IPR001680 GO:0005515
Gso13g1286 500 SMART WD40_4 348 390 IPR001680 GO:0005515
Gso13g1286 500 SMART WD40_4 436 475 IPR001680 GO:0005515
Gso13g1286 500 SMART WD40_4 265 302 IPR001680 GO:0005515
Gso13g1286 500 SMART WD40_4 178 219 IPR001680 GO:0005515
Gso13g1286 500 ProSitePatterns Trp-Asp (WD) repeats signature. 377 391 IPR019775 -
Gso13g1286 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
Gso13g1286 500 MobiDBLite consensus disorder prediction 116 184 - -
Gso13g1286 500 MobiDBLite consensus disorder prediction 1 65 - -
Gso13g1286 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Gso13g1286 500 MobiDBLite consensus disorder prediction 24 65 - -
Gso13g1286 500 PANTHER PROTEIN FIZZY-RELATED 3 10 500 - -
Gso13g1286 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 476 - -
Gso13g1286 500 Gene3D - 134 477 IPR015943 GO:0005515
Gso13g1286 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 476 IPR001680 GO:0005515
Gso13g1286 500 SUPERFAMILY WD40 repeat-like 176 476 IPR036322 GO:0005515
Gso13g1286 500 CDD WD40 216 475 - -
Gso13g1286 500 Pfam Eukaryotic translation initiation factor eIF2A 338 473 IPR013979 -
Gso13g1286 500 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1286 Gso-Chr13 28207287 28211587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1286 310 476 Miscellaneous Gene Families AT5G08390 22.727 3.38e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1286 K03364 - gmx:547741 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0329 18 3096293 3101700 Gso13g1286 13 28207287 28211587 GST