Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0309 ATGAAAAAGCAAGTGCAGGGTCCAATTCCAAACGCGTGTTTGAGTGAAAGCAGCAGGGGAGCAAGATGGTCTCTCAATGGAATGACGGCTCTTGTCACTGGTGGCACTCGTGGAATCGGGCACGCCATAGTGAATGACTTAGCCGCGTTTGGCGCTGCAGTGCACACTTGTTCCAGGAACCAAACAGAGCTCAAAAAGTGCTTACAAGAGTGGCAAACTCAGGGGTTTCAGGCTACTGGGTCGGTGTGTGATGTGTCTTCACCACCCCAGAGAGAGAAGCTCATTCAGGAAGTGGCATCCACCTTCAGTACTGAGCTTAACATCTATGTGAACAACGTCGGAACAAACTTTAGAAAGCCAACCGTTGAATACAGTGCTGAAGAATATTCAGAGCTGATGACAGTTAATTTAGACTCTGGTTACCATCTGTGCCAACTTGTATATCCTCTTCTAAAAGCATCTGTAAAGGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTGTGGTCAGCTTGGGTACTGGATCTGTCTATGCAGCATGTAAAGGTGCAATTAATCAGCTTAGCAAAAATCTGGCTTGTGAATGGGCAAATGACAACATAAGGAGTAACTGTGTTGTACCTTGGGCAACCAGAACCCCACTTGTTGAACATTTGTTCCAAAACCAAAAGTTTGTGGAAGATATTTTGTCTCGGACCCCTCTTAAGAGCATTGCAGAAGCGGAAGAAGTGTCATCACTGGACAAGTCAAGTTATTTGTGTTGA 762 0.4541 MKKQVQGPIPNACLSESSRGARWSLNGMTALVTGGTRGIGHAIVNDLAAFGAAVHTCSRNQTELKKCLQEWQTQGFQATGSVCDVSSPPQREKLIQEVASTFSTELNIYVNNVGTNFRKPTVEYSAEEYSELMTVNLDSGYHLCQLVYPLLKASVKGSIVFISSVAGVVSLGTGSVYAACKGAINQLSKNLACEWANDNIRSNCVVPWATRTPLVEHLFQNQKFVEDILSRTPLKSIAEAEEVSSLDKSSYLC* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0309 253 Pfam short chain dehydrogenase 29 222 IPR002347 -
Gso18g0309 253 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Gso18g0309 253 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 IPR002347 -
Gso18g0309 253 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 196 IPR002347 -
Gso18g0309 253 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 13 251 - -
Gso18g0309 253 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 164 192 IPR020904 GO:0016491
Gso18g0309 253 PRINTS Glucose/ribitol dehydrogenase family signature 29 46 IPR002347 -
Gso18g0309 253 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Gso18g0309 253 PRINTS Glucose/ribitol dehydrogenase family signature 151 167 IPR002347 -
Gso18g0309 253 PRINTS Glucose/ribitol dehydrogenase family signature 177 196 IPR002347 -
Gso18g0309 253 PRINTS Glucose/ribitol dehydrogenase family signature 198 215 IPR002347 -
Gso18g0309 253 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 245 IPR036291 -
Gso18g0309 253 Gene3D - 18 252 - -
Gso18g0309 253 PANTHER TROPINONE REDUCTASE 13 251 IPR045000 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0309 Gso-Chr18 2824391 2827791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0309 22 253 Miscellaneous Gene Families AT2G29290 56.897 1.80e-96 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0309 K08081 - gmx:106794151 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0309 18 2824391 2827791 Gso18g0309 18 2824391 2827791 ECH
Gso18g0309 18 2824391 2827791 Gso13g1310 13 28513575 28524105 GST