Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1310 ATGGCAGGAAGCAGCATTAACAGAGGAGAAAGATGGTCTCTCAATGGAATGACTGCTCTTGTCACCGGCGGCACTCGTGGGATCGGGCACTCCATAGTGAGTGACTTGGCTGCGTTTGGCGCTGCAGTGCACACCTGTTCCAGGACCCAAACAGAGCTCAACAAATGCTTACAAGAGTGGCAGAGTCAGGGGTTTCAGGTAACTGGGTCGCTCTGTGACGTGTCCTCACCACCCCAGAGAGAGAAGCTCATTCAGGAAGTTGCATCCACCTTCAATGGCAAGCTTAACATCTACGTGAACAATGTTGGAATAAACATTAGAAAGCCAACCATTGAGTACACTGCTGAAGAATATTCACAGATTATGACAGTTAATTTAGACTCCTCATTCCATCTGTGCCAACTTGCATATCCTCTTCTGAAAGCATCTGAAAAGGGAAGCATTGTGTTCATTTCATCTGTTGCTGGTGTAGTGAGTTTAGGTACTGGAGCTGTCTTTGCAGCAAGTAAAGCTGCAATTAATCAGCTTACAAAAAACCTGGCTTGTGACTGGGCCAAAGACAACATACGGAGCAACTGTGTTGTACCATGGGCAACCAGAACCCCGGTTGTAGAACATTTGTTCAAAGACCAAAAGTTTGTGGATGATATTATGTCTCGGACTCCAATTAAACGTATAGCAGAACCAGAAGAAGTGTCATCGTTGGTGAATTTTCTTTGCTTGCCTGCTGCTTCATTCATCATTGGACAGGTTATTTGTGTTGATGGAGGATTAACTGTGAATGGATTTCAACCCAGCATGAGAATTACCTGA 813 0.4502 MAGSSINRGERWSLNGMTALVTGGTRGIGHSIVSDLAAFGAAVHTCSRTQTELNKCLQEWQSQGFQVTGSLCDVSSPPQREKLIQEVASTFNGKLNIYVNNVGINIRKPTIEYTAEEYSQIMTVNLDSSFHLCQLAYPLLKASEKGSIVFISSVAGVVSLGTGAVFAASKAAINQLTKNLACDWAKDNIRSNCVVPWATRTPVVEHLFKDQKFVDDIMSRTPIKRIAEPEEVSSLVNFLCLPAASFIIGQVICVDGGLTVNGFQPSMRIT* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1310 270 Pfam Enoyl-(Acyl carrier protein) reductase 25 259 - -
Gso13g1310 270 PANTHER TROPINONE REDUCTASE 3 267 IPR045000 GO:0016491
Gso13g1310 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 93 104 IPR002347 -
Gso13g1310 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Gso13g1310 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Gso13g1310 270 Gene3D - 7 262 - -
Gso13g1310 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 261 IPR036291 -
Gso13g1310 270 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 3 267 - -
Gso13g1310 270 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Gso13g1310 270 PRINTS Glucose/ribitol dehydrogenase family signature 93 104 IPR002347 -
Gso13g1310 270 PRINTS Glucose/ribitol dehydrogenase family signature 140 156 IPR002347 -
Gso13g1310 270 PRINTS Glucose/ribitol dehydrogenase family signature 166 185 IPR002347 -
Gso13g1310 270 PRINTS Glucose/ribitol dehydrogenase family signature 187 204 IPR002347 -
Gso13g1310 270 PRINTS Glucose/ribitol dehydrogenase family signature 222 242 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1310 Gso-Chr13 28513575 28524105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1310 10 265 Miscellaneous Gene Families AT2G29290 60.078 2.06e-116 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1310 K08081 - gmx:100527615 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0309 18 2824391 2827791 Gso13g1310 13 28513575 28524105 GST