Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0303 ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGAAGGAGAGCTTGGTGTACATGTGGGGTTACCTGCCCGGAGCTCTGCCGCAGAGGACGCCTCTGTTGACGCCGCTTCTTGTTAGGGTTCCGCCCTCTGGTTACTTTTGGAAGGATGTCTGCGGCGGTGGTTGTGGATTCGCCATGGCTATCTCTGAGCCTGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTTAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACGGATTGTGGAGAAGTTTACACATGGGGATGGAGGGAATGTGTACCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGTAAGCCCTGAAAAGGATGTACCCAGAAGGCAAAGTTCATTCTTGACGGAGCAAGTGAGCCCTCGTTCTCAAGGTTCAAAATCTACTGGAGGAACTGCCTCTGGTACCAGTGGAGAAGAAAGTTCAAAGAGAAGAAGAGTATCTTCAGCAAAGCAAACAGCTGAAACCTCATCATCTAGTGATGATACTCAGACTGCATTGCCATGTCTTGTCACACTAAATCCTGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGTGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATTCCTCTTCTTATGGTAAAGATATGGCTCGAGTAAGCATAAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATTAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTTCTTACATTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTGAGCCCGAGTTGCGTATCTTCCTTATTGGGTATTCAAATAGAGGGAGTTGCTGCAGGACTGTGGCATACTGTGTGTACATCTGTGGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGACAGCTGGGAACTGGTGGTGATCAAGCTGAGACTATACCGAGGCTCTTGGATTGTCCGAGCTTGGAAAATGTGAATGTAAAGAGGATATCTTGTGGGGCTCGTCACACTGCTCTAATAGCAGATAATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTTGGCCTTGGGGACGTGATAGACCGTAACATCCCTTCTGAAGTTACCATCGAAGGTTGTGTAGCTAAAAACGTTGCATGCGGCTGGTGGCATACTCTTCTTCTGGCGGAATCACCCACTTGA 1419 0.4778 MNGEGSEAMQVEKESLVYMWGYLPGALPQRTPLLTPLLVRVPPSGYFWKDVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECVPSGKVFGESLTGVSPEKDVPRRQSSFLTEQVSPRSQGSKSTGGTASGTSGEESSKRRRVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKDMARVSISSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPSCVSSLLGIQIEGVAAGLWHTVCTSVDGDVYAFGGNQFGQLGTGGDQAETIPRLLDCPSLENVNVKRISCGARHTALIADNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0303 472 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 300 310 IPR000408 -
Gso18g0303 472 SUPERFAMILY RCC1/BLIP-II 17 470 IPR009091 -
Gso18g0303 472 Pfam Regulator of chromosome condensation (RCC1) repeat 314 361 IPR000408 -
Gso18g0303 472 Pfam Regulator of chromosome condensation (RCC1) repeat 419 467 IPR000408 -
Gso18g0303 472 Pfam Regulator of chromosome condensation (RCC1) repeat 365 416 IPR000408 -
Gso18g0303 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 420 470 IPR000408 -
Gso18g0303 472 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 10 472 - -
Gso18g0303 472 PRINTS Chromosome condensation regulator RCC1 signature 102 115 IPR000408 -
Gso18g0303 472 PRINTS Chromosome condensation regulator RCC1 signature 224 240 IPR000408 -
Gso18g0303 472 PRINTS Chromosome condensation regulator RCC1 signature 240 254 IPR000408 -
Gso18g0303 472 PRINTS Chromosome condensation regulator RCC1 signature 355 373 IPR000408 -
Gso18g0303 472 PRINTS Chromosome condensation regulator RCC1 signature 415 436 IPR000408 -
Gso18g0303 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Gso18g0303 472 MobiDBLite consensus disorder prediction 140 206 - -
Gso18g0303 472 Gene3D - 291 472 IPR009091 -
Gso18g0303 472 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 472 - -
Gso18g0303 472 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 406 416 IPR000408 -
Gso18g0303 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 313 IPR000408 -
Gso18g0303 472 MobiDBLite consensus disorder prediction 154 180 - -
Gso18g0303 472 Gene3D - 9 134 IPR009091 -
Gso18g0303 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 419 IPR000408 -
Gso18g0303 472 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 224 234 IPR000408 -
Gso18g0303 472 Pfam Regulator of chromosome condensation (RCC1) repeat 221 250 - -
Gso18g0303 472 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Gso18g0303 472 Gene3D - 172 288 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0303 Gso-Chr18 2752541 2758820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0303 - - gmx:100781488 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0303 18 2752541 2758820 Gso18g0303 18 2752541 2758820 ECH
Gso18g0303 18 2752541 2758820 Gso13g1317 13 28591384 28597760 GST
Gso18g0303 18 2752541 2758820 Gso14g0565 14 5409408 5415281 PCT
Gso18g0303 18 2752541 2758820 Gso2g2133 2 45989727 45995143 PCT
Gso14g0565 14 5409408 5415281 Gso18g0303 18 2752541 2758820 PCT
Gso2g2133 2 45989727 45995143 Gso18g0303 18 2752541 2758820 PCT