Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1317 ATGAATGGCGAGGGGAGTGAAGCAATGCAAGTGGAGATGGAGATTGAGAAGGAGAGGTTGGTGTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCACTGTTGACGCCGGTTCTCGTTAGGGTTCCGCCCTCTGGTTACTCTTGGAAGGATGTTTGCGGTGGTGGTTGTGGATTCGCCATGGCTATCTCTGAGCCTGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACACGGGGAAATTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACAGATTGTGGAGAAGTTTACACATGGGGATGGAGGGAATGTGTACCCTCTGGGAAGGTGTTTGGTGAATCATTAACTGGGGCAAGCCCCGAAAAGGATGTACCAGGAAGGCAAAGTTCATTCTTGACGGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAAATCTACTGGAGGAACTGCCTCTGGTACCAGTGGAGAAGAAAGTTCAAAGAGAAGAAGAGTATCTTCAGCAAAGCAAACAGCCGAAACCTCATCATCTAGTGATGATACTCAGACAGCATTGCCATGTCTTGTCACACTCAATCCAGGTGTAAGGATAGCAAGTGTAGCTGCTGGTGGTCGCCATACCTTAGCATTGTCAGATATAGGACATGTGTGGGGTTGGGGCTATGGTGGTGAAGGGCAGCTTGGTTTGGGTTCTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATTCCTCTTCTTATGGTAAAGATATATCAGCATCATTGGCTCGAGGAAGCATGAGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAGTTATATAAAGGGAATTGCCTGCGGAGGTCGACACAGTGCAGTAATCACAGATGCTGGAGCTGTGCTTACGTTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAATTAAGCCCGAATTGCGTATCTTCCTTATTGGGTATTCGAATAGAGGGAGTTGCTGCAGGACTGTGGCATACTGTGTGTACATCTGCTGATGGTGATGTATATGCATTTGGTGGAAACCAGTTTGGGCAGCTGGGAACTGGTGGTGATCAAGCTGAGACTATACCAAGGCTCTTGGATTGTCCGAGCTTGGAAAATGTGAACGTAAAAAGGATATCTTGTGGGGCTCGTCACACTGCTCTAATAACAGATAATGGAAAAGTCTTCTGCTGGGGATGGAACAAGTATGGACAGCTTGGCCTTGGGGACGTGATAGACCGTAACATTCCTTCTGAAGTTACCATCGAAGGTTGTGTAGCTAAAAACGTTGCATGTGGCTGGTGGCATACTCTTCTTCTGGCCGAGCCACCCACTTGA 1443 0.4782 MNGEGSEAMQVEMEIEKERLVYMWGYLPGALPQRTPLLTPVLVRVPPSGYSWKDVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGEIPEPFPLPTEVTIVKAAAGWAHCVSVTDCGEVYTWGWRECVPSGKVFGESLTGASPEKDVPGRQSSFLTEQVSPRSQGSKSTGGTASGTSGEESSKRRRVSSAKQTAETSSSSDDTQTALPCLVTLNPGVRIASVAAGGRHTLALSDIGHVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKDISASLARGSMSSDGQNFRVPGSYIKGIACGGRHSAVITDAGAVLTFGWGLYGQCGQGSTDDELSPNCVSSLLGIRIEGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGGDQAETIPRLLDCPSLENVNVKRISCGARHTALITDNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAEPPT* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1317 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 321 IPR000408 -
Gso13g1317 480 Pfam Regulator of chromosome condensation (RCC1) repeat 225 254 - -
Gso13g1317 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 322 373 IPR000408 -
Gso13g1317 480 PRINTS Chromosome condensation regulator RCC1 signature 106 119 IPR000408 -
Gso13g1317 480 PRINTS Chromosome condensation regulator RCC1 signature 228 244 IPR000408 -
Gso13g1317 480 PRINTS Chromosome condensation regulator RCC1 signature 363 381 IPR000408 -
Gso13g1317 480 PRINTS Chromosome condensation regulator RCC1 signature 423 444 IPR000408 -
Gso13g1317 480 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 308 318 IPR000408 -
Gso13g1317 480 Gene3D - 15 145 IPR009091 -
Gso13g1317 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 478 IPR000408 -
Gso13g1317 480 SUPERFAMILY RCC1/BLIP-II 21 478 IPR009091 -
Gso13g1317 480 Gene3D - 201 288 IPR009091 -
Gso13g1317 480 MobiDBLite consensus disorder prediction 155 184 - -
Gso13g1317 480 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 228 238 IPR000408 -
Gso13g1317 480 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 479 - -
Gso13g1317 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 427 IPR000408 -
Gso13g1317 480 MobiDBLite consensus disorder prediction 145 210 - -
Gso13g1317 480 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 70 122 IPR000408 -
Gso13g1317 480 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 14 479 - -
Gso13g1317 480 Gene3D - 289 477 IPR009091 -
Gso13g1317 480 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Gso13g1317 480 Pfam Regulator of chromosome condensation (RCC1) repeat 373 424 IPR000408 -
Gso13g1317 480 Pfam Regulator of chromosome condensation (RCC1) repeat 322 369 IPR000408 -
Gso13g1317 480 Pfam Regulator of chromosome condensation (RCC1) repeat 427 475 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1317 Gso-Chr13 28591384 28597760 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1317 - - gmx:100778841 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0303 18 2752541 2758820 Gso13g1317 13 28591384 28597760 GST
Gso13g1317 13 28591384 28597760 Gso14g0565 14 5409408 5415281 PCT
Gso13g1317 13 28591384 28597760 Gso2g2133 2 45989727 45995143 PCT
Gso14g0565 14 5409408 5415281 Gso13g1317 13 28591384 28597760 PCT
Gso2g2133 2 45989727 45995143 Gso13g1317 13 28591384 28597760 PCT