Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0229 ATGGCGGCTGCCAACGCTCCGATCGCCATGAGAGAAGCTCTCACCTTGCCAAGCATTGGCATAAATCCGCAGTTCATCACTTTCACGCATGTGACGATGGAGTCCGATAAGTATATATGCGTTCGAGAAACGGCTCCGCAGAATAGTGTGGTTATCATTGATATGAACATGCCGAATCAGCCTTTGAGGAGGCCTATTACGGCAGATTCCGCTCTTATGAATCCAAATTCCAGAATCCTTGCTTTGAAAGCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCCGAGCAGGTGGTCTTTTGGAAGTGGATTACCCCCAAGTTGTTGGGTCTTGTAACACAGACCTCTGTATACCATTGGTCAATTGAAGGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCAAATTTGGCAAACAATCAAATAATTAATTATAGATGCGATCCTTCTGAGAAATGGTTGGTCTTGATTGGTATTGCTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTCTTCTCTGTGGATCAACAGCGGAGCCAGGCTCTTGAAGCACATGCGGCATCATTTGCTCAATTCAAAGTTCCTGGGAATGAAAATCCTTCTACTTTGATTTCTTTTGCCACTAAAACACTTAATGCTGGCCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTTTTCTTTCCCCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATAACGAAACTTGGTCTCCTATTTGTCTACGATTTGGAGACAGCTACAGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACATCTGTTGGAGGCTTTTATGCCATTAATAGGAGAGGCCAGGTGTTGTTGGCTACTGTTAATGAGCAAACGATCGTGAATTTTGTCAGTGGTCAGTTAAACAATTTGGAGCTAGCAGTTAATCTTGCCAAGCGAGGAAATCTTCCTGGTGCTGAGAAACTGGTGGTAGAACGTTTCCATGAACTGTTTGCCCAAACAAAGTATAAAGAAGCAGCTGAACTTGCTGCTGAGTCTCCGCAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTCTAACAAGAGGAAAGCTGAATGCCTTTGAGTCATTGGAATTGTCACGGCTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCGGAGGATAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTAAAGACTGTGGACAATGATCTTGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTAATATACTCTAAGCAGGTTGGGTACACGCCCGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAATCTGATCCGTGAGGCAACAGCCTTTCTGCTAGATGTTCTGAAACCAAATCTACCAGAACATGGGTACCTTCAAACAAAGGTGTTGGAGATAAATCTGGTTACTTTCCCAAATGTTGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGAGCTTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGTCACTCGTTGAATTTTTTGGTACTCTGTCAAGAGAATGGGCATTAGAGTGTATGAAAGACCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTCAAGTACATTGAGGCAGCAGCAAAGACTGGACAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTTTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCTAAGCTTCCAGATGCACGACCTCTGATTAATGTTTGTGACCGATTTGGATTTGTTCCGGATCTAACACACTATCTATACACAAACAACATGCTTCGTTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTTTAGATGATGAATGTCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGAATCGGCTTCGTTTGCTTACACAGTTTTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGATAGCAACAACAATCCGGAACATTTTCTCACTACCAACCCATACTATGATTCTCGGGTTGTGGGCAAATATTGTGAGAAACGTGATCCCACCTTGGCAGTTGTAGCTTATAGGCGGGGACAATGTGATGAGGAGCTTATCAATGTGACAAACAAAAATTCTTTGTTCAAACTGCAAGCAAGATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATGCCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCTCTTCCTGAAAGCAAGAGCCCTGAACAAGTATCTGCAGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCACGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATCTTCAGAATCTGCTTATTTTAACAGCAATAAAGGCTGATCCGTCCAGAGTTATGGATTATATTAATAGACTGGATAATTTTGATGGGCCAGCAGTTGGAGAAATGGCTGTTGAGGCTCAATTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTCCAAGCAGTCAATGTCTTGCTAGATCATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTAGCCAAGGCTCAACTAAGGGAAGGGCTAGTAAGTGATGCCATTGAGTCCTTTATACGAGCAGACGATGCCACACAGTTTTTGGATGTTATCCGTGCTGCTGAAGATGGAAATGCTTACCATGACTTGGTGAGATACTTGTTGATGGTAAGGCATAAGACAAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCGTATGCAAAGATTGATCGGCTCAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACCGATTATATGATGAAGAACTATATGAGGCTGCTAAAATCATATTTGCATTTATATCTAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAATTCCAAGGTGCAGTTGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAGGAAGTTTGCTTTGCATGTGTTGACGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGGCTTAATATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCGCTTATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGTATCTTTACAGAGTTAGGAGTTCTGTATGCTAGATATCGTCATGAGAAGCTTATGGAGCATATCAAACTATTTGCGACCCGACTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAACATTGGAAGGAGCTGACATATTTGTACATCCAATATGATGAGTTCGATAATGCTGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCTAATGTAGAGTTGTATTACAAGGCTGTTCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCATACATGGTTGCAGTTCAGAGTAACAATGTGTCTGCTGTTAATGAAGCCCTTAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCGATTGATTTGCACGATAACTTCGACCAAATAGGCCTAGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTACAAGAAGGCAGGTAGATGGAAGCAGTCCATTGCCTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCGCAATCTGGTGACCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAAGAATGCTTTGCCTCGTGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGTTTATCCGTGAGTACACCGTCAAAGTTGATGAACTGGTGAAGGATAAAATTGAAGCGCAGAACCAAGTGAAGGCTAAAGAACAAGAAGAGAAGGAAGTAATTGCTCAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCCGCACCACCAATGCCTGGAATGGGAGGAGGCTTTGCGCCTCCCCCTCCAATGGGTGGATTGGGGATGCCTCCAATGCCTCCTTTTGGAATGCCACCCATGGGCAGCTACTGA 5103 0.4198 MAAANAPIAMREALTLPSIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGLVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTLISFATKTLNAGQIISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPDNAYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDHIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGNAYHDLVRYLLMVRHKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIDQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTVKVDELVKDKIEAQNQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPFGMPPMGSY* 1701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0229 1700 Coils Coil 1477 1497 - -
Gso18g0229 1700 PIRSF CHC 3 1679 IPR016341 GO:0016192|GO:0032051|GO:0071439
Gso18g0229 1700 PANTHER CLATHRIN HEAVY CHAIN 1 1698 - -
Gso18g0229 1700 Pfam Clathrin-H-link 369 434 - -
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Gso18g0229 1700 SUPERFAMILY ARM repeat 901 1066 IPR016024 -
Gso18g0229 1700 SUPERFAMILY ARM repeat 1052 1195 IPR016024 -
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gso18g0229 1700 Gene3D Tetratricopeptide repeat domain 902 1056 IPR011990 GO:0005515
Gso18g0229 1700 Gene3D Tetratricopeptide repeat domain 1057 1196 IPR011990 GO:0005515
Gso18g0229 1700 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Gso18g0229 1700 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1698 - -
Gso18g0229 1700 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Gene3D - 1542 1638 - -
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Coils Coil 1617 1651 - -
Gso18g0229 1700 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gso18g0229 1700 Pfam Region in Clathrin and VPS 557 690 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Region in Clathrin and VPS 993 1131 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Region in Clathrin and VPS 1146 1281 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Gso18g0229 1700 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Gso18g0229 1700 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
Gso18g0229 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Gso18g0229 1700 SUPERFAMILY ARM repeat 345 500 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0229 Gso-Chr18 1973731 1986005 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0229 K04646 - gmx:547986 3227.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0229 18 1973731 1986005 Gso18g0229 18 1973731 1986005 ECH
Gso18g0229 18 1973731 1986005 Gso13g1391 13 29438090 29449910 GST
Gso18g0229 18 1973731 1986005 Gso14g0494 14 4678377 4692279 PCT
Gso18g0229 18 1973731 1986005 Gso2g2196 2 46666724 46679487 PCT
Gso14g0494 14 4678377 4692279 Gso18g0229 18 1973731 1986005 PCT
Gso2g2196 2 46666724 46679487 Gso18g0229 18 1973731 1986005 PCT