Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1391 ATGGCGGCCGCCAACGCTCCGATCGCCATGAGAGAAACTCTCACCTTGCCGACCATTGGCATAAATCCGCAGTTCATCACGTTCACGCATGTGACAATGGAGTCCGATAAGTATATTTGCGTTCGAGAAACGGCTCCGCAGAATAGTGTGGTTATCATTGATATGAACATGCCGAATCAGCCTTTGAGGAGGCCTATTACCGCAGATTCCGCTCTTATGAATCCGAATTCCAGAATCCTTGCTTTGAAAGCTCAACTCCAAGGAACAACTCAAGATCACCTACAAATTTTTAACATTGAAATGAAAGCAAAGATGAAATCTTATCAGATGCCTGAGCAGGTGGTCTTTTGGAAGTGGATTACCCCCAAATTGTTGGGTATTGTAACACAGACCTCTGTATACCATTGGTCAATTGAAGGTGACTCTGAACCTGTAAAGATGTTTGAGAGAACAGCGAATTTGGCAAACAACCAAATAATTAATTATAGATGTGATCCTTCTGAAAAATGGTTGGTCTTGATTGGTATTGTTCCAGGTTCCCCTGAGAGGCCACAATTGGTTAAAGGAAACATGCAACTCTTCTCTGTGGAACAACAGCGGAGCCAGGCTCTTGAAGCACATGCTGCATCATTTGCTCAATTCAAAGTTCCTGGGAATGAAAATCCATCTACTTTGATTTCTTTTGCCACTAAAACACTTAATGCTGGTCAAATTATATCCAAGTTGCATGTTATTGAGCTGGGTGCACAGCCAGGGAAGCCATCATTTTCCAAGAAACAAGCAGATCTTTTCTTTCCTCCAGATTTTGCTGATGATTTTCCAGTTGCCATGCAGATATCCCACAAATACAGTTTGATTTATGTGATTACCAAACTTGGTCTCCTATTTGTCTACGATTTGGAGACAGCTACAGCTGTATATAGGAACAGAATTAGTCCAGATCCTATATTTTTGACATCAGAAGCTACGTCAGTTGGAGGCTTTTATGCCATTAATAGGAGAGGCCAGGTGTTATTGGCTACTGTTAATGAGCAAACAATCGTGAATTTTGTCAGTGGTCAGCTAAACAATTTGGAGCTAGCAGTTAATCTCGCCAAGAGAGGAAATCTTCCTGGTGCTGAGAAACTGGTGGTAGAACGTTTCCATGAACTGTTTGCCCAAACCAAGTATAAAGAAGCAGCTGAGCTTGCTGCTGAGTCTCCACAAGGAATCCTTCGCACACCTGATACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCACTATTGCAGTATTTTGGAACACTTCTAACAAGAGGAAAGCTGAATGCCTTTGAGTCATTGGAATTGTCACGGCTGGTTGTGAACCAGAACAAGAAAAATCTTTTGGAGAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTTGTAAAGACTGTGGATAATGATCTTGCCTTAAAAATATACATCAAAGCCAGAGCTACTCCAAAAGTTGTTGCTGCTTTTGCTGAGAGAAGGGAGTTTGACAAGATTCTGATATACTCTAAGCAGGTTGGGTACACGCCTGACTATCTCTTCCTTTTGCAAACAATTCTCCGGACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAATCTGATCCGTGAGGCAACAGCTTTTCTGCTAGATGTTCTGAAACCAAATCTACCAGAACATGGGTACCTTCAAACTAAGGTGTTGGAGATAAATCTAGTTACTTTCCCAAATGTTGCTGATGCAATTTTGGCTAATGGAATGTTCAGCCATTATGACCGTCCTCGTATTGCTCAACTTTGTGAAAAAGCTGGTCTTTATGTGCGATCTTTGCAACATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGTCACTCGTTGAATTTTTTGGTACTCTGTCACGAGAATGGGCATTAGAGTGCATGAAAGATCTATTGCTGGTCAATCTTAGAGGCAACCTACAGATTATTGTGCAGGTTGCTAAAGAATATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGTGAGGATCCTGACATTCACTTTAAGTACATTGAAGCAGCTGCAAAGACTGGACAAATCAAAGAGGTTGAGCGTGTGACTAGAGAATCAAGTTTCTATGATCCTGAGAAAACAAAGAACTTTCTAATGGAAGCTAAGCTTCCAGACGCACGACCTCTAATTAATGTTTGTGACCGGTTTGGATTTGTTCCGGATCTAACACACTATCTATACACAAGCAACATGCTTCGTTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTCGTTGGGCAGCTTTTAGATGATGAATGCCCAGAAGATTTTATCAAAGGCTTGATTCTCTCTGTTCGTTCCTTACTGCCAGTGGAGCCTCTTGTGGAGGAGTGTGAAAAGAGGAATCGGCTTCGTTTGCTCACACAGTTTTTGGAACATCTTGTAAGTGAGGGAAGCCAGGATGTACATGTTCACAATGCACTGGGTAAAATCATCATTGATAGCAACAACAATCCAGAACATTTTCTCACTACCAACCCATACTATGATTCTCGAGTTGTGGGCAAATATTGTGAGAAACGTGATCCCACCTTGGCAGTTGTAGCTTATAGGCGGGGACAATGTGACGACGAACTTATCAATGTGACAAACAAAAATTCTTTGTTCAAACTACAAGCAAGATATGTTGTTGAGAGGATGGATGGTGATCTTTGGGAGAAAGTTCTTAACCCTGATAATACCTACAGAAGGCAACTTATTGATCAGGTTGTATCTACAGCTCTTCCTGAAAGCAAGAGCCCCGAACAAGTATCTGCAGCTGTTAAGGCTTTCATGACTGCTGATCTACCTCACGAATTGATTGAGCTTCTTGAGAAGATTGTGCTTCAGAATTCTGCATTCAGTGGGAACTTTAATCTGCAGAATCTGCTTATTTTAACGGCAATAAAGGCTGATCCGTCCAGAGTTATGGATTATATTAATAGACTAGATAATTTTGATGGGCCTGCAGTTGGAGAAATGGCTGTTGAGGCTCAGTTATATGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTAAATGTCCAAGCAGTCAATGTCTTGCTAGATAATATTCATAGCATTGATAGAGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGTCAGGTGGCCAAGGCTCAACTAAGGGAAGGGCTAGTAAGTGATGCCATTGAGTCCTTTATACGAGCTGATGATGCCACACAATTTTTAGATGTTATCCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTGAGATACTTGCTGATGGTAAGGCAGAAGACAAAAGAACCCAAGGTGGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGCTAAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTAGCCAATCTTCAAAATGTTGGTGACCAATTGTATGATGAAGAACTATATGAGGCTGCCAAAATCATATTTGCCTTTATATCTAACTGGGCCAAGTTAGCAGTTACACTTGTGAAGTTGAAACAGTTCCAAGGTGCAGTTGATGCAGCAAGGAAAGCTAACAGTGCAAAAACATGGAAGGAAGTTTGCTTTGCATGTGTTGACGCAGAGGAGTTCCGTTTGGCCCAGATATGTGGGCTTAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTGCTTCAATGAGCTAATATCCCTCATGGAGAGTGGTTTAGGATTAGAACGGGCACATATGGGTATCTTTACAGAGTTAGGAGTTCTGTATGCTAGATATCGTTATGAGAAGCTCATGGAGCATATCAAACTATTTGCGACCCGACTCAATATTCCAAAACTCATAAGAGCTTGTGATGAACAACAACATTGGAAGGAGCTGACCTATTTGTACATCCAATATGATGAGTTTGATAATGCTGCAACAACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTCAAAGTTGCTAATGTAGAGTTGTATTACAAGGCTGTTCACTTCTATTTACAAGAGCATCCAGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGGCTGGTCATCTCCGTCTTGTCAAGCCTTACATGGTTGCAGTTCAGAGTAACAACGTGTCTGCTGTTAATGAAGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTCGCTGCTTATATTTACAAGAAGGCAGGTAGATGGAAACAGTCCATTGCCTTGTCAAAGAAAGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGTGACCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAAGAATGCTTTGCCTCGTGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAGTTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGTTTATCCGTGAGTACACTGGCAAAGTTGATGAACTGGTGAAGGATAAAATAGAAGCGCAGAACCAAGTGAAAGCTAAAGAGCAAGAAGAGAAGGAAGTAATTGCTCAACAGAATATGTATGCTCAGTTGTTGCCTCTTGCTTTGCCTGCACCGCCAATGCCTGGAATGGGAGGAGGCTTTGCCCCTCCCCCTCCAATGGGTGGATTGGGGATGCCTCCAATGCCACCTTTTGGTATGCCACCCATGGGTAGTTACTGA 5103 0.4182 MAAANAPIAMRETLTLPTIGINPQFITFTHVTMESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWITPKLLGIVTQTSVYHWSIEGDSEPVKMFERTANLANNQIINYRCDPSEKWLVLIGIVPGSPERPQLVKGNMQLFSVEQQRSQALEAHAASFAQFKVPGNENPSTLISFATKTLNAGQIISKLHVIELGAQPGKPSFSKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVNLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRSLQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPDNTYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEMAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNIHSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQNVGDQLYDEELYEAAKIIFAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFATRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLQEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIDQGKKECFASCLFVCYDLIRADIALELAWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNQVKAKEQEEKEVIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPFGMPPMGSY* 1701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1391 1700 Gene3D Tetratricopeptide repeat domain 903 1056 IPR011990 GO:0005515
Gso13g1391 1700 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Gso13g1391 1700 Gene3D Tetratricopeptide repeat domain 1057 1196 IPR011990 GO:0005515
Gso13g1391 1700 Coils Coil 1477 1497 - -
Gso13g1391 1700 Pfam Clathrin-H-link 369 434 - -
Gso13g1391 1700 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Region in Clathrin and VPS 557 690 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Region in Clathrin and VPS 1147 1281 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Region in Clathrin and VPS 993 1131 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Gene3D - 1542 1638 - -
Gso13g1391 1700 SUPERFAMILY ARM repeat 901 1066 IPR016024 -
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SUPERFAMILY ARM repeat 1053 1195 IPR016024 -
Gso13g1391 1700 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
Gso13g1391 1700 PIRSF CHC 3 1679 IPR016341 GO:0016192|GO:0032051|GO:0071439
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Coils Coil 1617 1651 - -
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1698 - -
Gso13g1391 1700 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Gso13g1391 1700 Pfam Clathrin propeller repeat 20 56 IPR022365 -
Gso13g1391 1700 PANTHER CLATHRIN HEAVY CHAIN 1 1698 - -
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Gso13g1391 1700 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Gso13g1391 1700 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Gso13g1391 1700 SUPERFAMILY ARM repeat 345 500 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1391 Gso-Chr13 29438090 29449910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1391 K04646 - gmx:100802224 3229.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0229 18 1973731 1986005 Gso13g1391 13 29438090 29449910 GST
Gso13g1391 13 29438090 29449910 Gso14g0494 14 4678377 4692279 PCT
Gso13g1391 13 29438090 29449910 Gso2g2196 2 46666724 46679487 PCT
Gso14g0494 14 4678377 4692279 Gso13g1391 13 29438090 29449910 PCT
Gso2g2196 2 46666724 46679487 Gso13g1391 13 29438090 29449910 PCT