Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0202 ATGAAGCCCCACACTCCGGCTTCTTCTTTCGTCACTCGTCTCCCGCACGTGCCTTACTTCCGCGGCGCCACTGCCGCACGTGCCGCGCCACCGGACCCTCCTCATGACGCCCCCGGAGGCCTCGAATTCCGCCGCGTCTCGACCGCCAAACGCCGCCGCGTCAGCCTTTCCGTCTGCCACGCGACTCGCGTCACCGCCGCCTCGAATCCCGGTGGTTCTGACGGCGACGGCGATACTCGAGCTCGGAGCAGCCGGCGCGGCGTGCTGATGGCGCCGTTCTTAGTCGCCGGCGCATCAATCCTGCTCTCGGCGGCGACGGCGAGGGCGGAGGAGAAGGCAGCGGAATCTCCTCTGGCTTCGGCGCCGAAGCCGGAGGAGCCGCCGAAGAAGAAGGAGGAGGAGGAAGTGATAACTTCGAGGATTTACGACGCGACGGTGATAGGAGAACCGTTGGCGATAGGGAAAGAGAAAGGGAAAGTGTGGGAGAAGTTGATGAATGCTCGAGTGGTGTATTTAGGTGAAGCAGAGCAAGTTCCGGTTCGAGACGATAGGGAATTGGAGCTTGAGATTGTGAAGAATTTGCATAGGCGCTGTTTGGAGAAGGAAAAACTATTGTCTCTGGCGCTTGAAGTTTTTCCCGCTAATATTCAGGAACCGCTCAATCAGTATATGGATAAGAAGATAGATGGAGACACCTTGAAGTCTTACACGTTGCATTGGCCGCCTCAAAGATGGCAGGAGTATGAACCTATTCTGAGCTACTGTCGCGAAAATGGAATTCATCTTGTTGCTTGTGGTACACCACTGAAGATCTTAAGAACTGTCCAAGCAGAAGGAATTCGTGGGCTTACAAAGGATGAACGTAAACTATATGCACCTCCAGCTGGTTCAGGCTTCATATCTGGCTTTACTTCTATCTCACGCAGATCTTCTGTTGATAGTACTCAAAATCTGTCTATTCCTTTTGGTCCAAGCTCATACCTTTCTGCACAGGCTCGAGTTGTTGATGAGTATTCTATGTCCCAGATTGTCTTACAAAATGTGCTTGATGGAGGGGTCACTGGTATGTTAATAGTTGTCACTGGTGCAAGCCATGTTACATATGGATCTAGAGGAACTGGAGTGCCAGCAAGAATTTCAGGAAAAATACAAAAGAAAAACCATGCAGTTATATTACTTGACCCTGAAAGACAATTCATTCGCAGAGAAGGAGAAGTTCCTGTTGCTGATTTTTTGTGGTATTCTGCTGCGAGACCCTGTAGTAGAAATTGCTTTGACCGTGCTGAGATTGCTCGGGTTATGAATGCTGCTGGGCGGAGGCGAGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCAGAGGTATTGCAGAACTTCTTTGATCTAGAGCAGTATCCTCTAATTTCAGAGCTCACTCACCGTTTCCAGGGATTCAGGGAAAGATTGTTGGCAGATCCCAAATTCTTGCACAGATTAGCCATAGAAGAAGCTATATCAATAACAACTACATTATTGGCACAGTATGAAAAGCGGAAAGAAAATTTTTTCCAAGAGATTGACTATGTTATTACGGACACTGTCAGAGGATCAGTTGTTGATTTCTTTACAGTGTGGCTTCCTGCACCAACTTTGTCATTCCTTTCATATGCTGATGAGATGAAAGCACCCGACAACATTGGTTCTCTAATGGGACTTCTTGGCTCCATCCCGGACAATGCATTTCAAAAGAATCCAGCAGGGATAAACTGGAATCTCAATCATAGGATTGCATCAGTTGTATTTGGTGGTTTAAAACTTGCTAGTGTTGGATTTATTTCAAGCATAGGAGCTGTGGCTTCATCAAATTCTCTATATGCAATTCGTAAAGTCCTTAATCCAGCAGTTGTCACTGAACAACGGATTATGAGGTCCCCAATACTCAAAACTGCATTTATATATGCATGCTTTCTTGGAATATCTGCAAATCTCCGTTATCAGATAATTGCTGGGATAGTGGAGCATCGGATTTCTGAACAGTTTGCTTCTCAAACATTCTTTGTAAATATGCTTTCTTTTGTAGCACGGACAGTCAATTCATATTGGGGAACCCAGCAATGGATTGACCTAGCGCGCTTTACTGGCCTACAAGTTAGAAAGACAGAGCCATCAGCATCAGATCCTCCGAATCCTTCTGCAATTTTATGCAACGAAACAGAAGAAGCCAGCATTGATGAGAGAGAAAAATAA 2244 0.4693 MKPHTPASSFVTRLPHVPYFRGATAARAAPPDPPHDAPGGLEFRRVSTAKRRRVSLSVCHATRVTAASNPGGSDGDGDTRARSSRRGVLMAPFLVAGASILLSAATARAEEKAAESPLASAPKPEEPPKKKEEEEVITSRIYDATVIGEPLAIGKEKGKVWEKLMNARVVYLGEAEQVPVRDDRELELEIVKNLHRRCLEKEKLLSLALEVFPANIQEPLNQYMDKKIDGDTLKSYTLHWPPQRWQEYEPILSYCRENGIHLVACGTPLKILRTVQAEGIRGLTKDERKLYAPPAGSGFISGFTSISRRSSVDSTQNLSIPFGPSSYLSAQARVVDEYSMSQIVLQNVLDGGVTGMLIVVTGASHVTYGSRGTGVPARISGKIQKKNHAVILLDPERQFIRREGEVPVADFLWYSAARPCSRNCFDRAEIARVMNAAGRRRDALPQDLQKGIDLGLVSPEVLQNFFDLEQYPLISELTHRFQGFRERLLADPKFLHRLAIEEAISITTTLLAQYEKRKENFFQEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADEMKAPDNIGSLMGLLGSIPDNAFQKNPAGINWNLNHRIASVVFGGLKLASVGFISSIGAVASSNSLYAIRKVLNPAVVTEQRIMRSPILKTAFIYACFLGISANLRYQIIAGIVEHRISEQFASQTFFVNMLSFVARTVNSYWGTQQWIDLARFTGLQVRKTEPSASDPPNPSAILCNETEEASIDEREK* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0202 747 MobiDBLite consensus disorder prediction 719 747 - -
Gso18g0202 747 Pfam Haem-binding uptake, Tiki superfamily, ChaN 160 379 IPR007314 -
Gso18g0202 747 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 44 746 - -
Gso18g0202 747 SUPERFAMILY EreA/ChaN-like 159 415 - -
Gso18g0202 747 MobiDBLite consensus disorder prediction 719 735 - -
Gso18g0202 747 MobiDBLite consensus disorder prediction 113 135 - -
Gso18g0202 747 Gene3D - 150 313 - -
Gso18g0202 747 Pfam Protein RETICULATA-related 486 670 IPR021825 -
Gso18g0202 747 PANTHER PROTEIN RETICULATA-RELATED 5, CHLOROPLASTIC 44 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0202 Gso-Chr18 1733211 1740541 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0202 - - gmx:100790538 1399.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0202 18 1733211 1740541 Gso18g0202 18 1733211 1740541 ECH
Gso18g0202 18 1733211 1740541 Gso13g1416 13 29677682 29684138 GST