Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0201 ATGTCAACCTCATCCTCTTCCCAAAGCCTCAAAATTGGCATAGTTGGATTCGGCAACTTTGGCCAGTTTCTGGCCAAGACAATGATAAAACAAGGCCACACTCTCACAGCAACTTCTCGATCTGATTACTCTGAACTTTGTCTCCAAATGGGCATCCATTTTTTCAGGGATGTCAGCGCATTCCTTACCGCGGACATAGATGTCATAGTGTTGTGCACATCGATATTATCGCTATCCGAGGTTGTCGGGTCAATGCCACTCACCTCCCTGAAGCGACCAACGCTCTTTGTTGATGTTCTTTCTGTCAAAGAGCACCCAAGAGAGCTTCTACTGCGAGAGTTGCCAGAGGATTCGGACATACTCTGCACGCACCCAATGTTTGGTCCTCAGACTGCCAAGAATGGATGGACAGATCACACTTTCATGTATGACAAAGTTCGGATAAGAGACGAAGCTACCTGCTCTAATTTCATCCAAATTTTTGCTACTGAGGGTTGCAAGATGGTACAGATGTCCTGTGAGGAACATGACAGAGCAGCTGCTAAGAGCCAATTTATCACTCACACAATTGGCAGGACACTGGGAGAAATGGATATTCAATCCACACCTATTGACACTAAGGGCTTCGAGACACTTGTTAAATTGAAGGAGACGATGATGAGAAATAGTTTTGATTTGTATAGTGGATTATTCGTGTATAACAGATTCGCCAGACAAGAGCTGGAAAACCTTGAACATGCCTTGCACAAAGTCAAAGAAACGCTGATGATACAAAGGACGAATGGGGAGCAGGGTCATAAAAGAACTGAAAGTTGA 816 0.4449 MSTSSSSQSLKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSELCLQMGIHFFRDVSAFLTADIDVIVLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGPQTAKNGWTDHTFMYDKVRIRDEATCSNFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHTIGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHALHKVKETLMIQRTNGEQGHKRTES* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0201 271 Pfam Prephenate dehydrogenase, nucleotide-binding domain 26 130 IPR046826 -
Gso18g0201 271 Gene3D - 1 177 - -
Gso18g0201 271 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 172 256 IPR008927 -
Gso18g0201 271 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 171 IPR036291 -
Gso18g0201 271 ProSiteProfiles Prephenate/arogenate dehydrogenase domain profile. 10 271 IPR003099 GO:0004665|GO:0006571|GO:0008977
Gso18g0201 271 PANTHER AROGENATE DEHYDROGENASE 1, CHLOROPLASTIC-LIKE 3 268 - -
Gso18g0201 271 Coils Coil 234 261 - -
Gso18g0201 271 PANTHER AROGENATE DEHYDROGENASE-RELATED 3 268 IPR045011 GO:0006571|GO:0033730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0201 Gso-Chr18 1730568 1733152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0201 K15227 - gmx:100787362 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0201 18 1730568 1733152 Gso18g0201 18 1730568 1733152 ECH
Gso18g0201 18 1730568 1733152 Gso13g1417 13 29684514 29686917 GST