Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0175 ATGGACACGCGCGGCCACGATGAGGAGGAGCCACCGAAACCTGTGGTTCTGATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCACGCGCCTTCGCTGAGAAGAAGTGCAGGGTGGTGGCCACCAGCAGGTCGCGGTCGAGCATGGCGGAGCTGGAACACGACCAAAGGTTCTTTTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGCGTAAGGTGGTTGATGCTGTTGTCGACAAGTACGGTCGCATCGACGTGCTCGTTAACAACGCCGGTGTTCAGTGTGTGGGCCCACTCGCCGAGGCTCCTCTCTCTGCCATCCAAAACACTTTCGACACCAATGTCTTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTTCCTCATATGGCAACTAAGAAAAAGGGGAAGATTGTCAATATTGGTAGTGTTGCTGCCTTGGCCTCTGGACCTTGGTCAGGAGCTTATACAGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGACTGGAACTTGGACATTTTGGAATTGATGTTGTCAATATTGTCCCCGGAGCTATCAAATCAAACATTGGAGATTCTGCCATAGCCAGCTACAACCGCATGCCAGAATGGAAATTATTCAAGCCTTTTGAAGCAGCAATCCGAGATAGAGCTTATTTTTCGCAGAAGTCCAAAACAACCCCTACAGATGAGTTTGCTATAAGCACTGTAGCTGCTGTCCTTAAGGAGAAACCACCTGCATGGTTCACCTATGGGCATTACTCTACTGTCATGGCTATCATGTATCATTTACCGATCTCTGTTAGAGATTTTGTTTTGAAGAAAGCAATGAAAGGCTGA 855 0.4901 MDTRGHDEEEPPKPVVLITGCSTGGIGHALARAFAEKKCRVVATSRSRSSMAELEHDQRFFLEELDVQSDESVRKVVDAVVDKYGRIDVLVNNAGVQCVGPLAEAPLSAIQNTFDTNVFGSLRMVQAVVPHMATKKKGKIVNIGSVAALASGPWSGAYTASKAALHALTDTLRLELGHFGIDVVNIVPGAIKSNIGDSAIASYNRMPEWKLFKPFEAAIRDRAYFSQKSKTTPTDEFAISTVAAVLKEKPPAWFTYGHYSTVMAIMYHLPISVRDFVLKKAMKG* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0175 284 Gene3D - 14 274 - -
Gso18g0175 284 CDD 17beta-HSD-like_SDR_c 15 260 - -
Gso18g0175 284 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 13 282 - -
Gso18g0175 284 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 268 IPR036291 -
Gso18g0175 284 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Gso18g0175 284 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Gso18g0175 284 PRINTS Glucose/ribitol dehydrogenase family signature 132 148 IPR002347 -
Gso18g0175 284 PRINTS Glucose/ribitol dehydrogenase family signature 158 177 IPR002347 -
Gso18g0175 284 PRINTS Glucose/ribitol dehydrogenase family signature 179 196 IPR002347 -
Gso18g0175 284 Pfam short chain dehydrogenase 15 198 IPR002347 -
Gso18g0175 284 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 194 - -
Gso18g0175 284 PANTHER BNAANNG04690D PROTEIN 13 282 - -
Gso18g0175 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Gso18g0175 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 IPR002347 -
Gso18g0175 284 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 IPR002347 -
Gso18g0175 284 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 145 173 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0175 Gso-Chr18 1520831 1523888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0175 10 195 Acyl Lipid Metabolism Gene Families AT3G55310 33.333 2.73e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0175 - - gmx:100789660 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0175 18 1520831 1523888 Gso13g1444 13 29930864 29932858 GST