Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1444 ATGTGTATGGAGAAGCACGGCCATGATGAGGAGGAGCAACCCAAACCTGTGGTTCTAATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCACGATCCTTCGCAGCGAACAGGTGCAGGGTGGTGGCCACCAGCAGGTCGCGGTGGAGCATGGCGGATCTGGAACACGACCACAGGTTCTTCTTGCAAGAATTGGATGTTCAGTCCGATGAGAGCGTGCGTAAAGTGGTCGATGCTGTTGTCGACAAGTACGGTCGCATCGACGTGCTTGTTAACAACGCTGGTGTTCAGTGTGTGGGCCCCCTTGCCGAGGTTCCTCTCTCTGCCATTCAAAACACTTTCGATACCAATGTCTTCGGTTCGTTGAGAATGATTCAGGCCGTTGTTCCTCATATGGCTGTTAGGAAACAGGGGAAGATAGTCAACGTTGGCAGCGTTGCTGCCTTGGCCTCTGGACCTTGGTCAGGCACTTACAATGCTTCCAAAGCTGCTCTTCATGCTTTCACTGATACATTAAGATTGGAACTTGGACACTTTGGAATCGACGTTGTGAATGTAGTTCCTGGAGCCATCACTTCCAATATTGCAAATAATGCCCTTGCCAATTACAATCGAATGCCTGAATGGAACTTATTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTCTTTGTCTCAGGGGTCCAAGTCGACCCCTTCGGAGGAGTTTGCTAAAAACACAGTAGCAGCTGTTCTTAAGAAGAATCCACCTGCATGGTTCTCCTATGGCCATTACTCTACCTTCATGGCTATCATGTATCATTTACCACTCTTTCTTAGAGACTTTTTTTTGAAGAAATTGATGAAATGCTGA 861 0.4855 MCMEKHGHDEEEQPKPVVLITGCSTGGIGHALARSFAANRCRVVATSRSRWSMADLEHDHRFFLQELDVQSDESVRKVVDAVVDKYGRIDVLVNNAGVQCVGPLAEVPLSAIQNTFDTNVFGSLRMIQAVVPHMAVRKQGKIVNVGSVAALASGPWSGTYNASKAALHAFTDTLRLELGHFGIDVVNVVPGAITSNIANNALANYNRMPEWNLFKPFEAAIRDRASLSQGSKSTPSEEFAKNTVAAVLKKNPPAWFSYGHYSTFMAIMYHLPLFLRDFFLKKLMKC* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1444 286 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 191 - -
Gso13g1444 286 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 10 285 - -
Gso13g1444 286 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 282 IPR036291 -
Gso13g1444 286 Pfam short chain dehydrogenase 17 202 IPR002347 -
Gso13g1444 286 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Gso13g1444 286 PRINTS Glucose/ribitol dehydrogenase family signature 87 98 IPR002347 -
Gso13g1444 286 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Gso13g1444 286 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Gso13g1444 286 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Gso13g1444 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 IPR002347 -
Gso13g1444 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Gso13g1444 286 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Gso13g1444 286 CDD 17beta-HSD-like_SDR_c 17 262 - -
Gso13g1444 286 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491
Gso13g1444 286 PANTHER BNAC02G00550D PROTEIN 10 285 - -
Gso13g1444 286 Gene3D - 16 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1444 Gso-Chr13 29930864 29932858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1444 12 199 Acyl Lipid Metabolism Gene Families AT1G62610 30.348 2.62e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1444 - - gmx:100775989 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0175 18 1520831 1523888 Gso13g1444 13 29930864 29932858 GST