Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0174 ATGTCGTCAAAATATCAGATTCTTGACAACCGCCCTATTAATCAGTGGAAGGTTACAGAGCTAAAAGATGAGCTGAAGAGGAGGAAGTTAAGTATCAAGGGTTTGAAGGATGATTTGGTCAAGCGTTTGGATGAAGTCCTTCGTCTTGAAAGGGAGGCTGACGAGGCTTCTGAGAAGGATGAGGCCAATGGTTTCGATGGTCATGTAGATGGGGAAAAAGATTCAGAGGCGGTTACTGTGGATGCTGAAATGGTTGATTCAACTGACAGGGACAATGCCAAAACATTTGAGACTGCTGAAAAGGGCAAGAGCGGTGTAGTTGATCCTGTTGAAATAGAAAATGTGGAAAAGATTCCGGAGGTTGTGGATCACGACAGCAATAAGAATGACAAGCAGGATGGTGTTACCAACCAAGTTGACATTAATAATAGTGTGTCAGCCATAGATCAAGAGGTTGAACCTAAGGGCTTGCCAGCTGGTGGAGATTCTGCAAATGTGGGACAGGAGGCAATTGCCCATGGTTCTACTGTGGAGAAGACTACCATTACAGTTAATGAGAGTGTAGTAACAGAAGTAGTGGCCAGTGCTGAGGATTCTTATCGTGCAGAAAAGAATAATGAGGATTCAGCAGCAAAGCTGGAGAATGAGGAGTCAAAGGCGCAGCTGGATGGTGAGGACTCAAAGCCCCAGCTGGATTGTGACATCAAGCCCTTGCATGAGGATCCTGTGCCCGACTCTTCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTCTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCAGAGATGGTGGAAGAACCATCATCCAGAAATGATGTACCTGTTTCTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATTTCAATAATGTTTTAAGTCCAGACATGAACAAGACCAATAGCAGCGATGATGTGGGGTATCCCGAAGAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAAAGACAAAATAGAGATTGAAGAGCCTATTGTGAAGGAGGAAAGTAGTACTATAGCTGTTGGAGATGGTCTGTCTGCAGGAGAAAGTGATATCCACCAAGATATTGACATTAGTCCAGTTGCTCCAACAGAGAAACGAAAATTTAATGAACAAGCATCAGTTGGGAACAATGAGCCTGCAAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATGCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAGCCAATTGCTTTGAAACGCAACTTCTCTAGGTCTGATTCCTCTGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCACCACAAAGGTCCCCAACTAATTCCCTCAGGATTGATCGTTTTCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCAGCAGCTTCTGGATGGACCAAATAAAGACCCATTGCTATGTGACTTACTCGTCTGTGGATGAAGCCATTGAGACACGGAATGCTGTATATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCTGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAACCTCCTCCTACTCAGGCTGCATCTGTCAGCACTGTCCCAGCAGTTCCTCCTGCACCTCCCTCACAGCCAGAGCCTTCCCCTCGTCTGCACAGGGAGCCGCATCCAGTTCCAGCTACTCTCCCACCTCCACCACCATTGTCAAAACCCCCACCAGTAGCAAGAGAACGGCTTCCATCTCCACCACCCCTTCCTGAGAAAGTTGACCCACCCATTGTCACTCTGGATGATCTCTTTCGCAAAACCACAGCCACTCCTCGGATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCCTCAAAACTTACAGCACAGGGTAAAAGCGCGAGGCAGTAG 2127 0.4452 MSSKYQILDNRPINQWKVTELKDELKRRKLSIKGLKDDLVKRLDEVLRLEREADEASEKDEANGFDGHVDGEKDSEAVTVDAEMVDSTDRDNAKTFETAEKGKSGVVDPVEIENVEKIPEVVDHDSNKNDKQDGVTNQVDINNSVSAIDQEVEPKGLPAGGDSANVGQEAIAHGSTVEKTTITVNESVVTEVVASAEDSYRAEKNNEDSAAKLENEESKAQLDGEDSKPQLDCDIKPLHEDPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSLSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEKKASVEENFNNVLSPDMNKTNSSDDVGYPEELNLDRSSGDDSMEEDLPETKQIDSKFNVDELKDKIEIEEPIVKEESSTIAVGDGLSAGESDIHQDIDISPVAPTEKRKFNEQASVGNNEPAKRQRRWNTETVKGPDAQSTTPRPATTPRDEPIALKRNFSRSDSSATDDTPKERIVPPPQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVDEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPPTQAASVSTVPAVPPAPPSQPEPSPRLHREPHPVPATLPPPPPLSKPPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVASKLTAQGKSARQ* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0174 708 MobiDBLite consensus disorder prediction 117 131 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 117 141 - -
Gso18g0174 708 Coils Coil 18 59 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 611 666 - -
Gso18g0174 708 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 705 - -
Gso18g0174 708 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 705 - -
Gso18g0174 708 SMART sap_9 13 47 IPR003034 -
Gso18g0174 708 MobiDBLite consensus disorder prediction 484 500 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 50 79 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 195 272 - -
Gso18g0174 708 CDD RRM_ACINU 514 598 IPR034257 -
Gso18g0174 708 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Gso18g0174 708 MobiDBLite consensus disorder prediction 461 476 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 247 272 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 340 356 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 299 322 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 598 670 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 358 387 - -
Gso18g0174 708 Gene3D SAP domain 13 62 IPR036361 -
Gso18g0174 708 Pfam SAP domain 13 45 IPR003034 -
Gso18g0174 708 MobiDBLite consensus disorder prediction 340 387 - -
Gso18g0174 708 MobiDBLite consensus disorder prediction 404 516 - -
Gso18g0174 708 Pfam RNSP1-SAP18 binding (RSB) motif 663 703 IPR032552 -
Gso18g0174 708 SUPERFAMILY RNA-binding domain, RBD 508 596 IPR035979 GO:0003676
Gso18g0174 708 MobiDBLite consensus disorder prediction 197 243 - -
Gso18g0174 708 SUPERFAMILY SAP domain 13 50 IPR036361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0174 Gso-Chr18 1510903 1514850 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0174 K12875 - gmx:100786288 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0174 18 1510903 1514850 Gso13g1448 13 29950327 29954242 GST