Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1448 ATGTCGCCAAAATATCAGATTCTCCACAATCGCCCCATCAATCAGTGGAAGGTTACAGAGCTGAAAGATGAGCTGAAGAGGAGGAAGATAAGTACCAAGGGTTTGAAGGATGATTTGGTCAAACGTTTGGACGAAGTCCTTCGTCTGGAAAGGGAGGTTGATGAGGCTTCTGAGAAGGATGAGGCCAATGGTTTCGATGGTCATGCAGATGGGAAAAAAGTTTCGGAAGCAGTTACTGTGGATGCTGAAATGGTTGATTCAACTGACAGGGCCAGTGCCAAAACATTTGATACTGCTGAAAAGGGCAAGGGTGGTTTTGTTGATCCAATTGAAACGGGAAATGTGGAAAAGATTCAGGAGATTGTGGATCATGACAGCGATAAGAATGACAAGCAGGACAGTGTTTCCAACCAAGTTAACATTAATAATAGTGTGTCAGCTATGGATCAAGAGGTTGAACCTAAGGGCTTGCCAGCTGGTGGAGATTATGCAAATGTGGGACATGAGGCAATTGCCCATGCTTCTACTGTGGAGACTATCATTACGGTCACTGAGAGTGTAGTAACAGAAGTAGTGGCCAGTGGTGAGGATACTTATCGTGCCGAAAAGAATAATGAGGATTCAGCAGCACAGCTGGAGAATGAGGTGTCAAAGGCGCAGCTGGATGGTGAGGACTCAAAGCCCCAACTGGATTATGACACCAAGCCCTTGCATGAGGATCCTGTTCCCGACTCTGCTGTTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTCTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTACTGATAATGTCAAATTAGAACAAGATATTGTTAAGCCGGAGATGGTGGAAGAACCATCATCCAGAAATGATGTTCCTGTTTCTTATGATGAATCACATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATATCAATAATGTTTCAAGTCCAGACTTGAACAAGACCAATAGCAGTGATGATGTAGGGTATTCAGAAAAGTTGAACTTGGACAGAAGTTCTGGTGATGATTCTATGGAAGAGGATTTGCCTGAGACTAAGCAAATTGATTCTAAGTTTAATGTTGATGAACTTAAAGACAAAGTAGAGATTGAAAAGCCTATTGTGAAGGAGGAAAGTAGTACTATAGCTGTTGGAGATAGTCTATCTGCAGGAAAAGATGATACCCACCAAGATATTGACATTAGTCCTGCTGCCCTGACTGAGAAACGGAAATTTAATGTTGGGAACAGTGAGCCTGCCAAAAGGCAACGCAGGTGGAACACTGAAACAGTTAAAGGTCCAGATGCACAAAGCACTACTCCCAGGCCTGCTACTACACCTAGAGATGAGCCAATTACTTTGAAACGCAGCTTCTCTAGGTCTGATTCCTCTGCAACTGATGATACACCTAAAGAACACATTGTTCCACCATCACAAAGGTCCCCAACTAATTCCCTCAGAATTGACCGTTTCCTCCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGTAAGACTGGGAATGTCAGCAGCTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCATCTGTGGAAGAAGCTATTGAGACACGGAATGCTGTATATAATTTGCAATGGCCACCAAATGGTGGGCGTCTCTTAGTTGCAGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGTTAGAACCTCCTCCTACTCAGGCTGCATCGGACAGCACTGATCGAGCAGTTCCTCCTGCTCCCCCCTTCTCACAGCCAGAGCCTTCCCCCCATCTGCACAGGGAGCAGCATCCAGTTCCAGTCATTCTCCCACCTCCACCACCATTGTCAAAACCCCCACCAGTAGCAAGAGAACGGCTTCCATCTCCACCACCCCTCCCTGAGAAAGTTGACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGGATCTACTATCTACCTTTGTCTGAAGAGCAAGTTGCCGCAAAACTTTCAACACAGGGTAAAAGCGGGAGGCAGTAG 2115 0.4444 MSPKYQILHNRPINQWKVTELKDELKRRKISTKGLKDDLVKRLDEVLRLEREVDEASEKDEANGFDGHADGKKVSEAVTVDAEMVDSTDRASAKTFDTAEKGKGGFVDPIETGNVEKIQEIVDHDSDKNDKQDSVSNQVNINNSVSAMDQEVEPKGLPAGGDYANVGHEAIAHASTVETIITVTESVVTEVVASGEDTYRAEKNNEDSAAQLENEVSKAQLDGEDSKPQLDYDTKPLHEDPVPDSAVPENQVSEVNPSLGSQVKSDSISTDSLSINQKNELKDTIITDNVKLEQDIVKPEMVEEPSSRNDVPVSYDESHSMDVGGLHEKKASVEENINNVSSPDLNKTNSSDDVGYSEKLNLDRSSGDDSMEEDLPETKQIDSKFNVDELKDKVEIEKPIVKEESSTIAVGDSLSAGKDDTHQDIDISPAALTEKRKFNVGNSEPAKRQRRWNTETVKGPDAQSTTPRPATTPRDEPITLKRSFSRSDSSATDDTPKEHIVPPSQRSPTNSLRIDRFLRPFTLKAVQELLGKTGNVSSFWMDQIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPPPTQAASDSTDRAVPPAPPFSQPEPSPHLHREQHPVPVILPPPPPLSKPPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLSTQGKSGRQ* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1448 704 MobiDBLite consensus disorder prediction 85 114 - -
Gso13g1448 704 SUPERFAMILY SAP domain 13 50 IPR036361 -
Gso13g1448 704 Coils Coil 202 222 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 218 242 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 396 510 - -
Gso13g1448 704 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Gso13g1448 704 MobiDBLite consensus disorder prediction 202 383 - -
Gso13g1448 704 Pfam SAP domain 13 45 IPR003034 -
Gso13g1448 704 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 701 - -
Gso13g1448 704 CDD RRM_ACINU 509 593 IPR034257 -
Gso13g1448 704 MobiDBLite consensus disorder prediction 335 356 - -
Gso13g1448 704 SMART sap_9 13 47 IPR003034 -
Gso13g1448 704 Gene3D SAP domain 13 62 IPR036361 -
Gso13g1448 704 MobiDBLite consensus disorder prediction 479 495 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 284 305 - -
Gso13g1448 704 SUPERFAMILY RNA-binding domain, RBD 503 591 IPR035979 GO:0003676
Gso13g1448 704 MobiDBLite consensus disorder prediction 440 455 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 357 383 - -
Gso13g1448 704 Pfam RNSP1-SAP18 binding (RSB) motif 659 698 IPR032552 -
Gso13g1448 704 MobiDBLite consensus disorder prediction 630 662 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 592 664 - -
Gso13g1448 704 Coils Coil 39 59 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 417 431 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 456 472 - -
Gso13g1448 704 MobiDBLite consensus disorder prediction 249 283 - -
Gso13g1448 704 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 1 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1448 Gso-Chr13 29950327 29954242 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1448 K12875 - gmx:100816245 1311.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0174 18 1510903 1514850 Gso13g1448 13 29950327 29954242 GST