Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0171 ATGCGGTGGCGGTTGCTGCTTTTGTTGCTTTTGGTAACGGCTCGCGCAATGCCGGTTCCGATCACGTTTTCCGCCCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGATACTGGCCGGACCGGTGGAGCATGGGCTACTACCGGATGCTTCTCACCGGCGACATTCTCCGGCGCAAGATCAAAGTCGGAGGCGCACGCTACCAGCTACTGTTTCCTTCTCACGGTAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTGCATTACACGTGGATTGATATAGGAACACCGAGCACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATCTCCTTTGGATTCCGTGTGATTGCGTACAGTGTGCTCCATTGTCATCGAGTTACTATTCCAATCTGGATAGAGATCTGAATGAGTATAGTCCGTCTCGGTCCTTATCCAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAAGGGTTCGAATTGTAAAAGTTCACAGCAGCAGTGTCCATACATGGTCAGTTACTTGTCGGAGAACACGTCGAGTTCTGGATTGTTGGTTGAGGACATACTGCATCTTCAGTCAGGCGGCAGTTTATCAAACTCATCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACGATTCTTTTTCCTTGTGCTTTAATGAAGATGATTCTGGTAGAATATTTTTTGGGGACCAGGGACCAACCATCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAACCTACATTATTGGAGTGGAGTCATGTTGTGTTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGTGCAGGTTGATAGCGGGACATCATTTACTTTTCTTCCTGGTCATGTGTATGGAGCAATAGCTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGAGTTGCCAAAGGTTCCCAGCTTAACTCTCACGTTCCAACAGAATAACAGTTTTGTGGTCTATGACCCCGTATTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATACAGCCAACTGAAGGAGATATGGGAACAATCGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCGTGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAACGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTCCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGA 1563 0.4715 MRWRLLLLLLLVTARAMPVPITFSARLVHRFADEMKPVRPPTGYWPDRWSMGYYRMLLTGDILRRKIKVGGARYQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHQLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGSLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHDSFSLCFNEDDSGRIFFGDQGPTIQQSTSFLPLDGLYSTYIIGVESCCVGNSCLKMTSFKVQVDSGTSFTFLPGHVYGAIAEEFDQQVNGSRSSFEGSPWEYCYVPSSQELPKVPSLTLTFQQNNSFVVYDPVFVFYGNEGVIGFCLAIQPTEGDMGTIGQNFMTGYRLVFDRGNKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAAPSRMISSCRVHWHCYLFLLLLLVSALY* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0171 520 PANTHER ASPARTYL PROTEASES 7 461 IPR001461 GO:0004190|GO:0006508
Gso18g0171 520 SUPERFAMILY Acid proteases 90 445 IPR021109 -
Gso18g0171 520 Gene3D Acid Proteases 83 278 IPR021109 -
Gso18g0171 520 PRINTS Pepsin (A1) aspartic protease family signature 102 122 IPR001461 GO:0004190|GO:0006508
Gso18g0171 520 PRINTS Pepsin (A1) aspartic protease family signature 320 331 IPR001461 GO:0004190|GO:0006508
Gso18g0171 520 PRINTS Pepsin (A1) aspartic protease family signature 416 431 IPR001461 GO:0004190|GO:0006508
Gso18g0171 520 MobiDBLite consensus disorder prediction 449 474 - -
Gso18g0171 520 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 7 461 - -
Gso18g0171 520 Gene3D Acid Proteases 280 446 IPR021109 -
Gso18g0171 520 ProSiteProfiles Peptidase family A1 domain profile. 96 440 IPR033121 -
Gso18g0171 520 Pfam Xylanase inhibitor C-terminal 317 440 IPR032799 -
Gso18g0171 520 Pfam Xylanase inhibitor N-terminal 97 278 IPR032861 -
Gso18g0171 520 MobiDBLite consensus disorder prediction 449 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0171 Gso-Chr18 1480952 1484605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0171 89 447 Miscellaneous Gene Families AT1G44130 26.440 5.64e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0171 - - gmx:100782209 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0171 18 1480952 1484605 Gso13g1451 13 30016825 30020728 GST