Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1451 ATGCAGTGGCGGTTGCTGCTTTTGTTGCTTTTGGAGCTAACGGCTCGCGCAATGCCGTATCCGATCACTTTTTCCGCGCGCCTCGTTCACCGCTTCGCCGACGAAATGAAACCGGTTCGGCCTCCGACCGGCTACTGGCCGGACCAGCGGAGCATGCGCTACTACCAGATGCTTCTCACCGGCGACATTCTCCGGCGCAAGATCAAAGTCGGAGGCACACGCTACCAGCTACTGTTTCCTTCTCACGGCAGCAAAACGATGTCGCTCGGCAACGACTTCGGCTGGTTACATTACACGTGGATTGATATAGGAACACCGAGTACTTCGTTTCTCGTGGCGTTGGACGCAGGGAGTGATCTTCTTTGGATTCCGTGTGATTGCGTACAGTGCGCTCCATTGTCATCGAGCTACTATTCCAATCTGGATAGAGACCTGAATGAGTATAGTCCGTCTCGGTCGCTATCCAGTAAGCATCTATCTTGCAGTCATCAGTTGTGTGATAAGGGTTCCAATTGTAAAAGTTCCCAGCAGCAGTGTCCATACATGGTCAGTTACTTGTCGGAGAACACGTCGAGTTCTGGATTGTTAGTTGAGGACATACTGCATCTTCAGTCAGGCGGCACTTTATCAAACTCATCTGTTCAGGCTCCAGTTGTTCTTGGGTGTGGTATGAAGCAAAGTGGTGGTTATTTGGATGGGGTTGCTCCAGATGGCCTATTAGGTTTGGGGCCTGGGGAGAGTTCAGTTCCAAGTTTTCTTGCTAAATCAGGATTAATCCACTATTCTTTTTCATTGTGCTTTAATGAAGATGATTCTGGTAGAATGTTTTTTGGGGACCAGGGACCAACCAGCCAACAGTCTACTTCATTCTTGCCTTTGGATGGATTATATTCAATCTACATTATTGGAGTGGAGTCATGTTGTATTGGGAATTCTTGTCTTAAAATGACAAGTTTTAAAGCACAGGTGGATAGTGGGACGTCATTTACATTTCTTCCTGGCCATGTGTATGGAGCAATAACTGAGGAGTTTGATCAACAAGTAAATGGTTCAAGATCTAGCTTTGAAGGATCTCCTTGGGAGTATTGTTATGTTCCCAGTTCGCAAGACTTGCCAAAAGTTCCCAGCTTTACTCTCATGTTCCAACACAATAACAGTTTTGTGGTCTATGATCCCGTGTTTGTATTCTATGGCAATGAGGGAGTCATTGGATTTTGTTTAGCCATATTGCCAACTGAAGGAGATATGGGAACAATTGGACAGAACTTCATGACAGGATACCGTTTGGTATTTGATAGGGGAAACAAGAAGCTAGCATGGTCACGCTCAAATTGTCAGGATCTGAGTCTAGGCAAGAGGATGCCCCTTTCTCCAAATGAGACTTCATCAAACCCATTGCCTACAGATGAGCAACAAAGAACGAATGGGCATGCAGTTGCTCCAGCTGTTGCTGGAAGAGCTCCCCACAAACCTTCGGCTGCTTCATCTCGGATGATTTCATCGTGCCGGGTACATTGGCACTGCTATTTGTTTCTTCTACTTCTACTTGTGTCTGCCCTTTACTGA 1566 0.4655 MQWRLLLLLLLELTARAMPYPITFSARLVHRFADEMKPVRPPTGYWPDQRSMRYYQMLLTGDILRRKIKVGGTRYQLLFPSHGSKTMSLGNDFGWLHYTWIDIGTPSTSFLVALDAGSDLLWIPCDCVQCAPLSSSYYSNLDRDLNEYSPSRSLSSKHLSCSHQLCDKGSNCKSSQQQCPYMVSYLSENTSSSGLLVEDILHLQSGGTLSNSSVQAPVVLGCGMKQSGGYLDGVAPDGLLGLGPGESSVPSFLAKSGLIHYSFSLCFNEDDSGRMFFGDQGPTSQQSTSFLPLDGLYSIYIIGVESCCIGNSCLKMTSFKAQVDSGTSFTFLPGHVYGAITEEFDQQVNGSRSSFEGSPWEYCYVPSSQDLPKVPSFTLMFQHNNSFVVYDPVFVFYGNEGVIGFCLAILPTEGDMGTIGQNFMTGYRLVFDRGNKKLAWSRSNCQDLSLGKRMPLSPNETSSNPLPTDEQQRTNGHAVAPAVAGRAPHKPSAASSRMISSCRVHWHCYLFLLLLLVSALY* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1451 521 SUPERFAMILY Acid proteases 91 446 IPR021109 -
Gso13g1451 521 MobiDBLite consensus disorder prediction 450 476 - -
Gso13g1451 521 Gene3D Acid Proteases 84 279 IPR021109 -
Gso13g1451 521 Pfam Xylanase inhibitor N-terminal 98 279 IPR032861 -
Gso13g1451 521 Pfam Xylanase inhibitor C-terminal 319 441 IPR032799 -
Gso13g1451 521 Gene3D Acid Proteases 281 447 IPR021109 -
Gso13g1451 521 ProSiteProfiles Peptidase family A1 domain profile. 97 441 IPR033121 -
Gso13g1451 521 PANTHER ASPARTIC PROTEINASE-LIKE PROTEIN 1 8 462 - -
Gso13g1451 521 PANTHER ASPARTYL PROTEASES 8 462 IPR001461 GO:0004190|GO:0006508
Gso13g1451 521 MobiDBLite consensus disorder prediction 450 475 - -
Gso13g1451 521 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Gso13g1451 521 PRINTS Pepsin (A1) aspartic protease family signature 321 332 IPR001461 GO:0004190|GO:0006508
Gso13g1451 521 PRINTS Pepsin (A1) aspartic protease family signature 417 432 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1451 Gso-Chr13 30016825 30020728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1451 90 448 Miscellaneous Gene Families AT1G44130 26.562 3.56e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1451 - - gmx:100817311 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0171 18 1480952 1484605 Gso13g1451 13 30016825 30020728 GST