Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0155 ATGTCTTCCCTTCAACTGTTGCAACTAACTCGGCATGGCCAGAGTTTTCTAGCTTCAAGGAGGAAAACTTTATTACTTGCATCTGGTATCTTAATTGCTGGTGGAACAGCTGCATATGTGCAATCAAGGTTTAGAGTTAATAATCACGATTTATTTGGCCATTGCAATGGGCACAGTAATGATAAAGAAGTTGCAGAGGAGGTTGTGAAGGATGTTAGTACTCCAAAAAATAAACAAAAGAAAGGGTTGAAGTCACTCCAAGTTCTAGCCGCAATTCTACTATCTGGAATGGGCAAATTTGGTGCAAGTGATCTTTTAGGTTTAGTTGCGATAGCGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCATTGTTTCTTCGGCTAATTTCAGAAAATATTCTTTTGTGCTTCCTTTTGTCAACCATTCATTCTACGTCAAAGTATATAACAGGGACTTTGAGTTTACATTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCGCATGTTGATGGTCGGATAACTAATCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCGGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCAGTTACTGATGGACTTTTATACACTTGGCGGTTGTGTTCATATGCTAGCCCAAAATATGTCGTCTGGATATTGGCATATGTACTTGGAGCTGGTGCTGCAATCAGAAACTTCTCTCCTTCATTTGGAAAACTTATGTCTAAAGAGCAGCAATTGGAAGGAGAGTATCGACAGCTTCACGCACGATTAAGGACTCACTCAGAAAGCATAGCATTCTATGGTGGAGAGAGGAAAGAAGAAGCTCATATTCAACAGAAGTTTAAAACCTTGGTTAGGCACATGTATAATGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTATTATTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATCATTGAACCTTTCTTTTCTGGTCATCTAAGGCCCGATAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGCCTCAGTGGGTATGCTGATCGCATTTATGAATTAATGGCCGTATCAAGGGAGCTAAGCTTGGTGAATGAGAAATCTTCCCTGCAAAGAAATGCAAGTAGAAATTGCATACGTGAAGCTAACTACATTGAATTTGATGGTGTCAAGGTTGTAACACCCACTGGTAATGTCTTGGTGGATGATCTGACTCTTAGGGTTGAATCAGGATCTAATCTTTTAATTACAGGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATAGTGAAACCTGGAATTGGCTCTGATCTTAATAAGGAGATTTTCTATGTGCCGCAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTCTTACTGAAGATCAAGAGATTGAACTTCTCACAGATCGTGGGATGGTGGAGCTGTTAAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCACCTGAAAAGGAGGTAAACTGGGGTGATGAACTGTCATTGGGTGAACAACAGAGATTGGGCATGGCAAGACTTTTCTATCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTCACTACCGATATGGAAGAACGGTTTTGTGCTAAAGTTAGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCATTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGGGAGGGCTCTTCTACTGAAATGGGGATTGATACGATGAAGGCATCAGAAAAAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAGGATTCTGCATTCTCAAGTCCAAAGGCACAGTCATATTTTGCGGAGGTGATATCATCATCTCCATCTATCAATCATACAATTTCACCATCTGCTGTTCCCCAACTCCATGGTAATACAAGGGTATTGCCATTGAGAGCAGCTGCCATGTGTAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCACAATTGCTTGCTGTCGCTTTTCTTGTTGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGCTGCATCTTCTTTCATTGCTCCTTCTATAAGGCACTTGACAGCCAGGCTGGCCCTGGGGTGGCGGATTCGTTTGACGCAACATCTACTAAAAAACTACTTAAGAAACAATGCATTCTACAAGGTCTTTCACATGGCAAACAAAAATATTGACGCAGATCAGAGGATAACTCACGACTTGGAGAAGTTAACAGCGGACTTGTCTGGATTGGTAACCGGAATGGTAAAGCCATCTGTGGATATTTTGTGGTTCACATGGAGAATGAAGCTATTAACAGGTCAGAGGGGGGTTGCCATACTCTATGCTTACATGTTACTTGGTCTGGGATTTTTAAGAACTGTTACTCCTGATTTTGGCGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAGCTCGAGAAAAAGCTATGGTTGAATCAAGATTCAGAGAGCTTCTCTCCCACTCTAAATACCTTTTAAAAAAGAAGTGGCTGTTTGGTATACTGGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGACCGTGCTTCAATAAGTACTCAGGGTGAGCTAGCACATGCATTGAGGTTCTTAGCATCTGTCGTTTCTCAAAGCTTTTTAGCTTTTGGCGACATTCTTGAATTGCACAGAAAGTTTGTAGAGCTTTCTGGTGGTATTAATCGGATCTTTGAGCTTGAAGAGCTTCTGGATGCAGCACAGTCTGGGGACTCCATCAATAGTAGTATTACATCTCCAATATGGGGTTATCATGGTAAAGATGCTATTTCCTTTTCTAAGGTTGATATTGTAACCCCTACCCAGAAGATGTTGGCCAGGGAGTTGACATGTGACATTGAGCTTGGTAAAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCCGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGACTCTCTAGACCATCTGAGGATGTGGATCAAGAGGCTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAGCGGCCTTACACATGCTTGGGAACATTGCGGGATCAAATTATATACCCATTGTCTCGTGAAGAGGCACAGTTTCGAGCACTGAAGATGCATGGAAAAGGTGAAAAACATCCTGACCCTAGAAAAATGTTGGACACACACTTGCAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAAAGAGACAACAATGGCTGGGATGCAAATCTAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTACCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAATGGGGATCACTGTTGTTACTTCCTCACAACGTCCTGCTTTAATACCATTTCATTCCATGGAATTGCGTCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTCGATCAAGCAATGA 4008 0.4152 MSSLQLLQLTRHGQSFLASRRKTLLLASGILIAGGTAAYVQSRFRVNNHDLFGHCNGHSNDKEVAEEVVKDVSTPKNKQKKGLKSLQVLAAILLSGMGKFGASDLLGLVAIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVVWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTHSESIAFYGGERKEEAHIQQKFKTLVRHMYNVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTEDQEIELLTDRGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSSTEMGIDTMKASEKKRQSDAKAVQRAFSMSKKDSAFSSPKAQSYFAEVISSSPSINHTISPSAVPQLHGNTRVLPLRAAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQSGDSINSSITSPIWGYHGKDAISFSKVDIVTPTQKMLARELTCDIELGKSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDQEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAQFRALKMHGKGEKHPDPRKMLDTHLQVILENVRLNYLLERDNNGWDANLNWEDILSLGEQQRLGMARLFYHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSMELRLIDGEGNWELRSIKQ* 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0155 1335 SUPERFAMILY ABC transporter transmembrane region 759 1066 IPR036640 GO:0005524|GO:0016021
Gso18g0155 1335 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g0155 1335 CDD ABCD_peroxisomal_ALDP 445 653 - -
Gso18g0155 1335 Pfam ABC transporter 1115 1281 IPR003439 GO:0005524
Gso18g0155 1335 Pfam ABC transporter 462 607 IPR003439 GO:0005524
Gso18g0155 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1097 1333 IPR003439 GO:0005524
Gso18g0155 1335 SMART AAA_5 470 649 IPR003593 -
Gso18g0155 1335 SMART AAA_5 1122 1334 IPR003593 -
Gso18g0155 1335 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 85 595 - -
Gso18g0155 1335 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 590 1335 - -
Gso18g0155 1335 Pfam ABC transporter transmembrane region 2 744 1009 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g0155 1335 Pfam ABC transporter transmembrane region 2 89 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso18g0155 1335 Gene3D - 431 705 IPR027417 -
Gso18g0155 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 649 IPR027417 -
Gso18g0155 1335 CDD ABCD_peroxisomal_ALDP 1097 1328 - -
Gso18g0155 1335 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 85 595 - -
Gso18g0155 1335 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 590 1335 - -
Gso18g0155 1335 Gene3D ABC transporter type 1, transmembrane domain 91 420 IPR036640 GO:0005524|GO:0016021
Gso18g0155 1335 ProSitePatterns ABC transporters family signature. 579 593 IPR017871 GO:0005524
Gso18g0155 1335 ProSitePatterns ABC transporters family signature. 1253 1267 IPR017871 GO:0005524
Gso18g0155 1335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1089 1324 IPR027417 -
Gso18g0155 1335 Gene3D - 1091 1326 IPR027417 -
Gso18g0155 1335 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 445 674 IPR003439 GO:0005524
Gso18g0155 1335 SUPERFAMILY ABC transporter transmembrane region 141 415 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0155 Gso-Chr18 1295497 1310281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0155 1 1335 Acyl Lipid Metabolism Gene Families AT4G39850 77.703 0.0 2134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0155 K25819 - gmx:100813765 2617.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0155 18 1295497 1310281 Gso13g1469 13 30187075 30201594 GST