Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1469 ATGTCTTCCCTTCAACTGTTGCAACTAACTCGGCGTGGCCAGAGTTTTCTGGCTTCAAGGAGGAAAACTTTATTACTTGCATCTGGTATCTTAATCGCTGGTGGAACTGCTGCATATGTGCAATCAAGGTTTAGAGTTAATAAACATGATTTATTTGGCCATTGCAATGGGCACAACAATGATAAAGAAGTCACAGAGGAGGAGGTTGTGAAGGGTGTTAGTGCTCCAAAAAATAAACAAAAGAAAGGGTTGAAGTCACTCCAAGTTCTTGCTGCAATTCTACTATCTGGAATGGGCAAATTTGGTGCAAGGGATCTTCTTGGTTTAGTTGTGATAGCGGTGCTGCGAACTGCTTTGAGCAACAGGCTAGCTAAAGTGCAAGGCTTCCTATTTCGTGCTGCTTTTCTTCGACGTGTACCATTGTTTCTTCGGCTAATTTCAGAAAATATTCTTTTGTGCTTCCTTTTGTCAACCATTCATTCTACGTCAAAGTATATAACAGGGACTTTGAGTTTACACTTCAGAAAAATATTGACAAAGCTTATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCGCATGTAGATGGTCGGATAACTAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCGGAGTTGAGTGAAATTGTACAGGATGATCTAACAGCTGTTACTGATGGACTTTTATACACTTGGCGGTTGTGTTCGTATGCTAGCCCAAAATATGTCGTCTGGATATTGGTATATGTACTTGGAGCTGGTGCTGCAATCAGAAACTTTTCTCCTTCATTTGGAAAGCTTATGTCCAAAGAGCAGCAATTGGAAGGAGAGTATCGACAGCTTCACGCACGATTAAGGACTCACTCAGAAAGCATAGCATTCTATGGTGGAGAGAGGAAAGAAGAAACTCATATTCAACAGAAGTTTAAAACCTTGGTTAGGCACATGTATAGTGTGCTACATGACCATTGGTGGTTTGGCATGATTCAGGACTTATTATTGAAGTACCTTGGTGCTACTGTTGCTGTTATTTTGATTATTGAACCTTTCTTTTCTGGTCATCTAAGGCCTGATAGTTCAACTTTAGGGCGTGCAGAGATGTTAAGCAATCTTAGATATCATACTAGTGTCATAATTTCCTTATTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTCAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAATTAATGGCTGTATCAAGGGAGCTAAGCTTGGTGAATGAGAAATCTTCCCTGCAAAGAAATGCAAGTAGAAATTGCATACGTGAAGCTAACTACATTGAATTTGATGGTGTCAAGGTTGTAACACCCACTGGTAATGTCTTGGTGGATGATCTGACTCTTAGGGTTGAATCAGGATCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAAAGCTCCCTTTTCCGGGTTCTAGGTGGTCTTTGGCCATTGATATCTGGACATATTGTGAAACCTGGAATTGGCTCTGATCTTAATAATGAGATTTTCTATGTGCCGCAAAGGCCATACACTGCTGTAGGAACACTTCGAGATCAGTTGATTTATCCTCTTACTGAAGATCAAGAGATTGAACCACTCACAGATCGTGGGATGGTGGAGCTGCTAAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCGCCTGAAAGGGAGGTAAACTGGGGTGATGAACTGTCATTGGGTGAGCAACAGAGATTAGGCATGGCAAGACTTTTCTATCATAAGCCTAAATTTGCAATTCTAGATGAGTGCACAAGTGCTGTCACTACTGATATGGAAGAACGATTTTGCGCTAAAGTTAGGGCCATGGGAACATCATGCATTACCATATCACATCGTCCAGCATTGGTTGCTTTCCATGATGTGGTTTTATCCTTAGATGGTGAAGGAGGATGGAGTGTTCATTATAAAAGGGAGGGCTCTTCTACTGAAGTGGGGATTGATACGATGAAGGCATCAGAAACAAAACGACAGAGTGATGCAAAGGCAGTTCAACGTGCATTTTCCATGAGCAAAAAGGATTCTGCATTTTCAAATCCAAAGGCACAGTCATATTTTGCGGAGGTGATATCATCATCTCCATCTATGAATCATACAATTCCACCATCTGTTGTTCCCCAACTCCATTGTAATACAAGGGTATTGCCATTGAGAGTAGCTGCCATGTGCAAAGTATTGGTACCCACTGTACTTGATAAACAAGGTGCACAACTGCTTGCTGTCGCTTTTCTTGTCGTTTCAAGAACATGGGTCTCAGATCGTATTGCATCACTAAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTTCCTTTATTCGGTTAATTGGTTTAAGTGTTCTTCAAAGTGTTGCATCTTCTTTCATTGCTCCTTCTATAAGGCACTTGACAGCCAGGCTGGCTCTGGGGTGGCGGGTTCGTTTGACACAACATCTACTAAAAAACTACTTAAGAAACAATGCATTCTACAAGGTCTTTCACATGGCAAACAAAAATATTGACGCAGATCAGAGGATAACTCACGACTTGGAGAAGTTAACAGCAGACTTGTCTGGATTGGTCACCGGAATGGTAAAGCCATCTGTGGATATTTTGTGGTTCACATGGAGAATGAAACTATTAACAGGTCAGAGGGGGGTTGCCATACTCTATGCTTACATGTTACTTGGTCTGGGATTTTTAAGAACTGTTACTCCTGATTTTGGCAATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTTAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCAGTTGCTTTCTTTGGAGGTGGAGCTCGAGAAAAAGCTATGGTTGAATCAAGATTCAGAGAGCTTCTCTCCCACTCTAAATACCTTTTAAAAAAGAAATGGCTGTTTGGTATACTGGATGATTTTATCACAAAGCAACTCCCTCATAATGTGACTTGGTTGCTGAGCTTATTATATGCTATGGAACATAAGGGAGACCGTGCTTCGATAAGTACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTTGGAGATATTCTAGAATTGCACAGAAAGTTTGTAGAACTTTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAACTTCTGGATGCATCACAGTCTGGGGACTCCATCAATAGTAGTATTACATCTCCAATATGGGATTATCATGGTAAAGATGCTATTTCCTTTTGTATGGTTGATATTGTAACCCCTACCCAGAAGATGTTGGCCAGGGAGTTGACATGTGACATTGAGTTTGGTAAAAGCCTGCTTGTTACTGGTCCAAATGGAAGTGGAAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGACTCTCTAGACCATCTGAGGATGTGGATCTAGAGGCTGGATCAGGTTGTGGCATCTTCTATGTTCCTCAGCGGCCTTACACATGCTTGGGAACATTGCGGGATCAAATTATATACCCATTGTCCCGTGAAGAAGCACAGTTTCAAGCATTGAAGATGCATGGAAAAGGTGAAAAACATCCTGACCTTAGAATAATGTTGGACACACACTTGCAAGTTATCCTAGAGAATGTTAGGTTGAATTATCTTCTAGAAAGAGACAATAATGGCTGGGATGCAAATCTAAACTGGGAAGACATTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGGCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAATGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAATGGGGATCACAGTTGTTACTTCCTCACAACGTCCTGCTCTAATACCATTTCATTCCATGGAATTGCATCTGATTGATGGTGAGGGTAATTGGGAACTTCGTTCGATCAAGCAATGA 4011 0.4126 MSSLQLLQLTRRGQSFLASRRKTLLLASGILIAGGTAAYVQSRFRVNKHDLFGHCNGHNNDKEVTEEEVVKGVSAPKNKQKKGLKSLQVLAAILLSGMGKFGARDLLGLVVIAVLRTALSNRLAKVQGFLFRAAFLRRVPLFLRLISENILLCFLLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVTDGLLYTWRLCSYASPKYVVWILVYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHARLRTHSESIAFYGGERKEETHIQQKFKTLVRHMYSVLHDHWWFGMIQDLLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRELSLVNEKSSLQRNASRNCIREANYIEFDGVKVVTPTGNVLVDDLTLRVESGSNLLITGPNGSGKSSLFRVLGGLWPLISGHIVKPGIGSDLNNEIFYVPQRPYTAVGTLRDQLIYPLTEDQEIEPLTDRGMVELLKNVDLEYLLDRYPPEREVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREGSSTEVGIDTMKASETKRQSDAKAVQRAFSMSKKDSAFSNPKAQSYFAEVISSSPSMNHTIPPSVVPQLHCNTRVLPLRVAAMCKVLVPTVLDKQGAQLLAVAFLVVSRTWVSDRIASLNGTTVKFVLEQDKASFIRLIGLSVLQSVASSFIAPSIRHLTARLALGWRVRLTQHLLKNYLRNNAFYKVFHMANKNIDADQRITHDLEKLTADLSGLVTGMVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGNLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAMVESRFRELLSHSKYLLKKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASISTQGELAHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDASQSGDSINSSITSPIWDYHGKDAISFCMVDIVTPTQKMLARELTCDIEFGKSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEDVDLEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAQFQALKMHGKGEKHPDLRIMLDTHLQVILENVRLNYLLERDNNGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLANKMGITVVTSSQRPALIPFHSMELHLIDGEGNWELRSIKQ* 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1469 1336 Pfam ABC transporter 463 608 IPR003439 GO:0005524
Gso13g1469 1336 Pfam ABC transporter 1116 1282 IPR003439 GO:0005524
Gso13g1469 1336 ProSitePatterns ABC transporters family signature. 1254 1268 IPR017871 GO:0005524
Gso13g1469 1336 Gene3D - 432 706 IPR027417 -
Gso13g1469 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 650 IPR027417 -
Gso13g1469 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1092 1334 IPR003439 GO:0005524
Gso13g1469 1336 SMART AAA_5 471 650 IPR003593 -
Gso13g1469 1336 SMART AAA_5 1123 1326 IPR003593 -
Gso13g1469 1336 Gene3D ABC transporter type 1, transmembrane domain 102 421 IPR036640 GO:0005524|GO:0016021
Gso13g1469 1336 CDD ABCD_peroxisomal_ALDP 1098 1329 - -
Gso13g1469 1336 SUPERFAMILY ABC transporter transmembrane region 760 1067 IPR036640 GO:0005524|GO:0016021
Gso13g1469 1336 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 675 IPR003439 GO:0005524
Gso13g1469 1336 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 83 596 - -
Gso13g1469 1336 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 591 1336 - -
Gso13g1469 1336 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 107 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g1469 1336 SUPERFAMILY ABC transporter transmembrane region 108 416 IPR036640 GO:0005524|GO:0016021
Gso13g1469 1336 ProSitePatterns ABC transporters family signature. 580 594 IPR017871 GO:0005524
Gso13g1469 1336 Gene3D - 1092 1329 IPR027417 -
Gso13g1469 1336 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 591 1336 - -
Gso13g1469 1336 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 83 596 - -
Gso13g1469 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1110 1325 IPR027417 -
Gso13g1469 1336 Pfam ABC transporter transmembrane region 2 745 1010 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g1469 1336 Pfam ABC transporter transmembrane region 2 90 358 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso13g1469 1336 CDD ABCD_peroxisomal_ALDP 446 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1469 Gso-Chr13 30187075 30201594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1469 1 1336 Acyl Lipid Metabolism Gene Families AT4G39850 77.554 0.0 2124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1469 K25819 - gmx:100791623 2617.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0155 18 1295497 1310281 Gso13g1469 13 30187075 30201594 GST