Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0111 ATGGGAGAAACCGGGATCATTGTCAGCTTCCAGGGTAACTTAGACCCGAGAGCAGAGGAGTTCAGACCCCTCAATCTTCAATGCCAATGGTATCCTCTTCCTCTTCCCACACCCCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACTCCGCTCCCATTCGCCTCCCACTCCGCCCTCCGCGCAGAACTCCAGGCCTTCGGCGACATCAGAGCCCTCCAAACCGACTCCCTCCGCCACGGCATCCTCACCGTCCACTTCTTCGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCTCCATTTCCCTCAATTCCTCCTCTCGGCCCACCCCATCTCCGCCCACTACGTCCTCCCTTCCTCCAACGCCTTCCCCGACGCCCACAACCAAGGCACCCTCGTCATCTTCAACCTCCACCCCAACCTCTCCACCGTCCAACTCCGTCGTCTCTTCCAACCTTTCGGTCCCATAAAGGAATTGAGAGATACCCCATGGAAAAAGAATCAGAGATTTGTGGAGTTCTTCGACATAAGAGACGCCGCCAAGGCCTTGAAGCACATGAACGGCAAGGAAATTCACGGCAAACAGGTTGTGATTGAGTTCAGTAGACCCGGTGGTCACACCCGCAAGTTCTTCCATCATTCTCCTCCTTCCGAAACCACACCTTTCAACGTTCCTCCGCCACCACCACCGTTTCCTCCTTCCCCGCGACGTCGTTTTGCTGCTCCTCGCTTGCATTCCTCTCAAAAGAAATCACCGGGAAGCCACAAGAGTACGGGATCTATTGATGCGGAAATGGGATCAATGAGTTTGACCGGAGAAGTTGAAGTTCAGCATTCTTCACATGGCCCCACACGGAGGAATCTTAGCAGAAAGCACAATTGCGATACCACTGTAGTAGTAGGAACCACCACCAAGCAGCAGCAGCAGCAACAACAACAACAACAAGTACCTAGAAGTAGGCACTGGAAGGGAAAACAAGCGAAGAAACAAGAAACTAGGTTTCTAATCAAAGAGGGTGCCATTGTAGAATCTGGTCCCAAAGATACTAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTATAGTCAGAAGTTGCTATTAAACATGCTGGATAACCACTGCAGACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGTTTTGTGAACATGACTTCCACGGAGGCAACACTCAGGCTCCACAAGGCCTTCCATCTTCAACATTGGGAGGTTTTCAATTCAAGAAAAATCTGCGAAGTCACCTATGCTAGAGTTCAGGGATTGGAAGCATTGAAAGAGCACTTCAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACTTACCAGTGGTGTTTTCGCCGCCTCGAGATGGGAAAGAACTGACGGAGCCACTTCCAATAGTGGGGAACAAGCAACAACAACAAGCCATATCAAGTGGCGGCGGCGGCAGCGGCAGCGTAGGTGATGATGATGAGACAAATGAAGAAGTGGGTAGTAGTGTTGTGATTCTGAAAGACAGCATTTAA 1620 0.5148 MGETGIIVSFQGNLDPRAEEFRPLNLQCQWYPLPLPTPLSTSSTRSLLLTPLPFASHSALRAELQAFGDIRALQTDSLRHGILTVHFFDLRHAESAFAAIRSMHLHFPQFLLSAHPISAHYVLPSSNAFPDAHNQGTLVIFNLHPNLSTVQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMNGKEIHGKQVVIEFSRPGGHTRKFFHHSPPSETTPFNVPPPPPPFPPSPRRRFAAPRLHSSQKKSPGSHKSTGSIDAEMGSMSLTGEVEVQHSSHGPTRRNLSRKHNCDTTVVVGTTTKQQQQQQQQQQVPRSRHWKGKQAKKQETRFLIKEGAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCRHCNEQIADGDEQQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSTEATLRLHKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKELTEPLPIVGNKQQQQAISSGGGGSGSVGDDDETNEEVGSSVVILKDSI* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0111 539 MobiDBLite consensus disorder prediction 253 269 - -
Gso18g0111 539 MobiDBLite consensus disorder prediction 499 513 - -
Gso18g0111 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 202 IPR000504 GO:0003723
Gso18g0111 539 SUPERFAMILY RNA-binding domain, RBD 137 435 IPR035979 GO:0003676
Gso18g0111 539 CDD RRM3_EAR1_like 356 458 IPR034458 -
Gso18g0111 539 MobiDBLite consensus disorder prediction 225 243 - -
Gso18g0111 539 SMART rrm1_1 137 205 IPR000504 GO:0003723
Gso18g0111 539 Gene3D - 303 463 IPR012677 -
Gso18g0111 539 PANTHER RNA BINDING PROTEIN 34 513 - -
Gso18g0111 539 MobiDBLite consensus disorder prediction 211 269 - -
Gso18g0111 539 MobiDBLite consensus disorder prediction 309 336 - -
Gso18g0111 539 MobiDBLite consensus disorder prediction 309 326 - -
Gso18g0111 539 Pfam RNA recognition motif 2 356 467 IPR007201 -
Gso18g0111 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 209 IPR000504 GO:0003723
Gso18g0111 539 Gene3D - 130 216 IPR012677 -
Gso18g0111 539 PANTHER TERMINAL EAR1-LIKE 1 34 513 - -
Gso18g0111 539 MobiDBLite consensus disorder prediction 499 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0111 Gso-Chr18 914846 918247 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0111 - - gmx:100803603 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0111 18 914846 918247 Gso13g1510 13 30569159 30572058 GST