Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1510 ATGGGAGAAACCGGTATCATTCTCAGCTTCCCCGGAAACTTAGACCCGAGAGCAGAAGAGTTCAGACCCAACACCATAAATATTCAATGCCAATGGTACCCTCTTCCTCTTCCTCTTCCACTTCCCATACCCCTCCCTCCTCCTAACCTCACCACCTCCTCCACCCGCTCCCTCCTCCTCACCCCGGTCCCTCTCACCTCCCACTCCGCCCTCCGAGCCGAGCTCCAGGCCTTCGGTGACATCAGAGCCCTCCAAACCGAAGCCCTCCGCCACGGCATTCTCACCGTCCACTTCTTCGACCTCCGCCATGCACAATCCGCCTTCGCCGCCATCCGCTCCATGCAACTCCACTTCCACCCCAACCCTGGCCTCCTCTCTGCCCACTACGTCCTCCCTAACTCCAACTCCCTCCCCGACTCCCACAACCAAGGCACCCTCGTCATCTTCAACCTCCACCCCAACCTCTCCTCCGACCAACTCCGTCGTCTCTTCCAACCTTTCGGTCCCATAAAGGAATTGAGAGATACCCCATGGAAAAAGAATCAAAGATTCGTGGAGTTCTTCGACATAAGAGACGCCGCCAAGGCCTTGAAACACATGAACGGCAAGGAAATTGACGGCAAACAGGTTGTTATTGAGTTCAGTAGACCCGGTGGTCACACCCGTAAGTTCTTCCATCATCATTCCAAAACCACAGTACCTCCTCTCAATTTCAATGCTCCTCGCTTGCATTCCTCTCAGAAGAAATCACCGGGAAGTCCCAGCAATAGTACGGGATCTATTGATGCGGAAATGGGGTCAATGAGTTTGACCGGAGGAGAAGTTGAAGAGCAGCATTCTTCTTCACAAGGCCCCACGCGGAGGAATCTTGGCAGAAAGCACACCACACTAGTAGTAGGAAACACCAAGCAACAACAAGTACCTAGAAGTAGGCACTGGAAGGGAAAACAAGCGAAGAAACACGAAACTCGGTTTCTAATCAAAGAGGACGCCATTGTAGAATCTGGTCCCAAAGATACTAGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGCCAGAAGTTGCTATTAAACATGCTGGATAACCATTGCAGACACTGCAACGAGCAGATTGCAGACGGCGAAGAGCAGCAGCCTCTGTCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTTGTGAACATGACATCCCCGGAGGCAACACTCAGGCTCTACAAGGCCTTCCATCTTCAACATTGGGAGGTTTTCAATTCAAGAAAAATCTGCGAAGTCACCTATGCTAGAGTTCAGGGTTTGGAAGCATTGAAAGAGCACTTTAAGAACTCAAAGTTCCCATGTGAGATGGAGCATTACTTGCCAGTGGTGTTTTCACCGCCTCGAGATGGGAAAGAACTGACGGAGCCACTTCCACTAGTGGGGAACAAGCAGCAGCAACAAGCCATTCCAATTCCAATCTCAAGTGGCGGTGATGGTGACGTGGCTAGCAGCAAAAGTGGCGGCTTAGGTGGTGATGATGAGACAAATGAAGAAGAAGTGGCCTAG 1578 0.5108 MGETGIILSFPGNLDPRAEEFRPNTINIQCQWYPLPLPLPLPIPLPPPNLTTSSTRSLLLTPVPLTSHSALRAELQAFGDIRALQTEALRHGILTVHFFDLRHAQSAFAAIRSMQLHFHPNPGLLSAHYVLPNSNSLPDSHNQGTLVIFNLHPNLSSDQLRRLFQPFGPIKELRDTPWKKNQRFVEFFDIRDAAKALKHMNGKEIDGKQVVIEFSRPGGHTRKFFHHHSKTTVPPLNFNAPRLHSSQKKSPGSPSNSTGSIDAEMGSMSLTGGEVEEQHSSSQGPTRRNLGRKHTTLVVGNTKQQQVPRSRHWKGKQAKKHETRFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCRHCNEQIADGEEQQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKELTEPLPLVGNKQQQQAIPIPISSGGDGDVASSKSGGLGGDDETNEEEVA* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1510 525 Pfam RNA recognition motif 2 341 452 IPR007201 -
Gso13g1510 525 MobiDBLite consensus disorder prediction 225 320 - -
Gso13g1510 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 217 IPR000504 GO:0003723
Gso13g1510 525 PANTHER RNA BINDING PROTEIN 36 507 - -
Gso13g1510 525 PANTHER TERMINAL EAR1-LIKE 1 36 507 - -
Gso13g1510 525 SUPERFAMILY RNA-binding domain, RBD 336 425 IPR035979 GO:0003676
Gso13g1510 525 MobiDBLite consensus disorder prediction 485 525 - -
Gso13g1510 525 MobiDBLite consensus disorder prediction 273 308 - -
Gso13g1510 525 SMART rrm1_1 145 213 IPR000504 GO:0003723
Gso13g1510 525 SMART rrm1_1 343 428 IPR000504 GO:0003723
Gso13g1510 525 Gene3D - 274 444 IPR012677 -
Gso13g1510 525 Gene3D - 138 225 IPR012677 -
Gso13g1510 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 210 IPR000504 GO:0003723
Gso13g1510 525 CDD RRM3_EAR1_like 341 443 IPR034458 -
Gso13g1510 525 MobiDBLite consensus disorder prediction 232 265 - -
Gso13g1510 525 SUPERFAMILY RNA-binding domain, RBD 130 223 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1510 Gso-Chr13 30569159 30572058 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1510 - - gmx:100802212 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0111 18 914846 918247 Gso13g1510 13 30569159 30572058 GST