Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0067 ATGTCGTTCGCGTCATCATTCTCGATGCTCCGGCACCGCGCGGCGGCTTCCGCGGCGCCTCTCCTCCTCCTCCGCCGCTTCCGCTGCCTCCGAATCGCCGCCAGACACCAACAACAAAACCCTAACAAACAAGCCCCCCCAAGCCGCAACCTCCTGAAGGCGAAACAGACACTGAAGGAATTTTCCTCTCTTGCCCCTGTCCTCTCCCTCGAAGCCAGCCCCCCTCTCACCGAATCCCAGGCCATCGGCGTGGTGGCGGCGTCGCAGGCCAACTTCATGCGCGTCATCGTCCCCGAAAACGACGAGCCTTCTGGAAGCTTCCGCGGGGTTGAGATACTTTGCGTGGTGAGGGCGCTGCTGAAGAAGATTAAGCGGAGGGTGATGGTTGGGGACAAGGTTCTTGTGGGGTCCATCGATTGGGTGGACCGCAGGGGCATGATCGAGAATGTCTTCCACCGAACCTCCGAGATTCTCGACCCTCCCGTTGCCAACGTCGACCAACTTCTCGTACTTTTCTCGCTCGAACAGCCCAAGCCTGAAGCCTTCACCCTAACGCGCTTTCTGGTGGAAGCTGAATCCACTGGAATCCCTCTTACGCTCGCACTCAACAAGACCGAGCTTGTGGATAATGAAATCATTAGTTCGTGGAAGGCTAGGTTGCGCAGCTGGGGGTATGAGCCGGTTTTTTGCAGTGTTGAATCTGGACATGGACTTGATCTTCTTGGTTTCAAGTTGAGGGATCAAACAACGGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGAAGCAATCCTTCCAATGCTGCAGAAGGGGAGAATTGGTTTGAGCCTGTTCTGGGAAGCAAGTGGCTTGAGGATCAGCGAGTTGGGGAGGTTTCAACAAGAAGCGGTAGAGGGAAGCATACTACTCGCCATGTCTCTCTGCTTCCATTGTCTGAAGGGGGTTTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATCAGGAAAATGCTTAGTGCCAGTGAGATTGAGAAATGCTCGTTTAACAATTGCTTGCATCTGGGTGAACCTGGGTGCATTGTGAAGGGAGATTGGGAAAGATATTCCTACTATTTCCAACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTCAGGACGTTTGGAACTAAAAGAGAAGGGGATGTAAGGTTGAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCACGTTTGGAACCTAAGAAGCATAGAAGACAATCTCGGAAGAGGATTAACCAGTCAATTTTAGATGAATTGGATGATGATGACGACAATTTGCTTGATGAGGAGAATGATCCCATTTTAAGGGCGCTAAGGAATGAAAACTCTTAG 1422 0.5105 MSFASSFSMLRHRAAASAAPLLLLRRFRCLRIAARHQQQNPNKQAPPSRNLLKAKQTLKEFSSLAPVLSLEASPPLTESQAIGVVAASQANFMRVIVPENDEPSGSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFHRTSEILDPPVANVDQLLVLFSLEQPKPEAFTLTRFLVEAESTGIPLTLALNKTELVDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGFKLRDQTTVIVGPSGVGKSSLINALRSNPSNAAEGENWFEPVLGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSASEIEKCSFNNCLHLGEPGCIVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKRINQSILDELDDDDDNLLDEENDPILRALRNENS* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0067 473 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 72 455 - -
Gso18g0067 473 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 154 332 IPR030378 GO:0005525
Gso18g0067 473 Gene3D - 76 150 IPR012340 -
Gso18g0067 473 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 72 455 IPR004881 GO:0003924|GO:0005525
Gso18g0067 473 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 81 397 IPR004881 GO:0003924|GO:0005525
Gso18g0067 473 ProSiteProfiles EngC GTPase domain profile. 163 330 IPR010914 GO:0003924|GO:0005525
Gso18g0067 473 Pfam RsgA GTPase 150 334 IPR010914 GO:0003924|GO:0005525
Gso18g0067 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 395 IPR027417 -
Gso18g0067 473 CDD YjeQ_EngC 163 391 IPR004881 GO:0003924|GO:0005525
Gso18g0067 473 Gene3D - 151 334 IPR027417 -
Gso18g0067 473 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 127 271 IPR004881 GO:0003924|GO:0005525
Gso18g0067 473 Gene3D Probable gtpase engc; domain 3 336 398 - -
Gso18g0067 473 MobiDBLite consensus disorder prediction 416 445 - -
Gso18g0067 473 SUPERFAMILY Nucleic acid-binding proteins 81 153 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0067 Gso-Chr18 577603 581094 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0067 K06949 - gmx:100796145 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0067 18 577603 581094 Gso13g1554 13 30915901 30919132 GST