Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1554 ATGTCGTTCGCATCATCATTCTCGATGCTCCGCCACCGCGCGGTGGCGGCATACGCGCCCACTCTCCTCCTCCGCCGCTTCCGCTGTCTCCCAACGATCGCCGCCAGACACCAACAACAACAACAAAACCCTAACAAACAAGCTGCTGCCCCGAGCCGCAACCTCCTGAAGGCGAAACAAACACTGAAAGAGTATTCCTGTCTTGCCCCTGTCCTCTCCCTCGAAGACAGCCCTCCTCTGACGGAATCCCAGGCCATCGGCGTGGTGGCGGCGTCGCAGGCCAACTTCATGCGCGTCATCGTCCCCGAAAATGACGAACCTTCTGGAAGCTTCCGCGGGGTGGAGATTCTCTGCGTGGTGAGGGCGCTGCTGAAGAAGATTAAGCGGAGGGTGATGGTCGGGGACAAGGTTCTTGTGGGGTCCATCGATTGGGTTGACCGCAGGGGCATGATCGAGAATGTCTTCCAGCGAACCTCCGAGATTCTCGACCCTCCCGTTGCTAACGTCGACCAACTTCTCGTGCTTTTCTCGCTCGAACACCCCAAGCCTGAACCCTTCACCCTCACGCGCTTTCTTGTCGAAGCTGAATCCACCGGAATCCCTCTCATGCTCGCACTCAACAAGACGGAGCTTGTGGATAATGAGATCATTAGTTCATGGAAGGCTAGGTTGCGCAGCTGGGGGTATGAGCCGGTTTTTTGCAGTGTTGAATCTGGACATGGACTTGATCTTCTTGGTTACAAGTTGAGGGATCAAACGACAGTGATTGTGGGGCCTAGTGGAGTTGGGAAGTCTAGTTTGATCAATGCCCTTAGAAGCAATCCTTCCGATGCTGCGGAAGGGGATAATTGGTTTGAGCCTATTTTGGGAAGCAAGTGGCTTGAGGATCAGCGAGTTGGGGAGGTTTCGACCAGAAGTGGTAGAGGGAAGCATACTACTCGTCATGTCTCTCTACTTCCATTGTCTGAAGGGGGTTTTCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTTGCACAGACTTTTCCTGAAATCAGGAAAATGCTTAGTGCCAATGAGACTGAGAAATGTTCATTTAACAATTGCTTGCATCTGGGTGAACCTGGGTGCATTGTGAAGGGAGATTGGGAAAGATATTCCTACTATTTTCAACTTCTTGATGAAATCAGAATCAGGGAGGAGTTCCAGCTCAGGACATTTGGAACTAAAAGAGAAGGGGATGTAAGGTTGAAAATGGGAGACATGGGTGTTCAGCAAGCAGAACCACGCTTGGAACCTAAGAAGCATAGGAGACAATCTCGGAAAAGCATTAACCAGTCAATTTTAGATGAATTGGATGATGATGACGACGACAATTTGCTTGATGAGGAGAATGATCCTATTTTAAGGGCGCTATTTCGTTAA 1428 0.5028 MSFASSFSMLRHRAVAAYAPTLLLRRFRCLPTIAARHQQQQQNPNKQAAAPSRNLLKAKQTLKEYSCLAPVLSLEDSPPLTESQAIGVVAASQANFMRVIVPENDEPSGSFRGVEILCVVRALLKKIKRRVMVGDKVLVGSIDWVDRRGMIENVFQRTSEILDPPVANVDQLLVLFSLEHPKPEPFTLTRFLVEAESTGIPLMLALNKTELVDNEIISSWKARLRSWGYEPVFCSVESGHGLDLLGYKLRDQTTVIVGPSGVGKSSLINALRSNPSDAAEGDNWFEPILGSKWLEDQRVGEVSTRSGRGKHTTRHVSLLPLSEGGFLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLSANETEKCSFNNCLHLGEPGCIVKGDWERYSYYFQLLDEIRIREEFQLRTFGTKREGDVRLKMGDMGVQQAEPRLEPKKHRRQSRKSINQSILDELDDDDDDNLLDEENDPILRALFR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1554 475 SUPERFAMILY Nucleic acid-binding proteins 85 157 IPR012340 -
Gso13g1554 475 Pfam RsgA GTPase 154 338 IPR010914 GO:0003924|GO:0005525
Gso13g1554 475 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 85 401 IPR004881 GO:0003924|GO:0005525
Gso13g1554 475 Gene3D - 80 154 IPR012340 -
Gso13g1554 475 MobiDBLite consensus disorder prediction 422 461 - -
Gso13g1554 475 ProSiteProfiles EngC GTPase domain profile. 167 334 IPR010914 GO:0003924|GO:0005525
Gso13g1554 475 Gene3D - 155 338 IPR027417 -
Gso13g1554 475 CDD YjeQ_EngC 167 395 IPR004881 GO:0003924|GO:0005525
Gso13g1554 475 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 75 459 IPR004881 GO:0003924|GO:0005525
Gso13g1554 475 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 75 459 - -
Gso13g1554 475 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 131 274 IPR004881 GO:0003924|GO:0005525
Gso13g1554 475 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 158 336 IPR030378 GO:0005525
Gso13g1554 475 Gene3D Probable gtpase engc; domain 3 340 402 - -
Gso13g1554 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 399 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1554 Gso-Chr13 30915901 30919132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1554 K06949 - gmx:100801862 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0067 18 577603 581094 Gso13g1554 13 30915901 30919132 GST