Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0029 ATGGTGAATGCACTCAGTCATAATCAGAGTCACTTTCTGGTGGTGCTGTTGAACTCCAATTCCAATTGCAGAGGGAGCAAGAGTGGTAACAACACCGTCTTCCGAAAACCCTTTGTGAAATTCCGAACCCTCACCACTCAAATTTGCCACTCCTCTTACCACCGATTCGCTGACACAAAGCACACAACCCTTCTGGTTGAGACTTACCATCTCCATGACAGCCTCAGAGCTTTACTTGCAAAGCTTCAGAAGGAAGATTGCAACCCTCTCCACGTACTCGCAGAAGATGGTGATTGGTCCAAAGACCATTTTTGGGCCGTTGTCAGGTTCCTTAAAAGTGCCTCAAGGTTCACCCAAATCCTTCAGGTGTTTGATATGTGGAAGAACATTGAGAAATCACGAATTAGTGAGTTCAACTATAACAAGATCATAGGCTTGTTATGTGAAGGAGGAAAGATGGAAGATGCATTATCTGCATTGCGAGATATGAAAGTTCAAGGTATCAAGCCTTCTTTGGACACTTACAATCCAATAATTCATGGATTATCCAGAGAAGGTAAGTTCAGTGATGCTTTACGTTTTATTGATGAGATGAAAGAATCTGGCTTAGAGCTGGATTCTGAAACCTATGATGGTTTGCTTGGAGCCTATGGGAAATTTCAAATGTATGATGAGATGGGTGAGTGTGTGAAGAAGATGGAGTTGGAAGGATGTTCTCCTGATCATATCACTTATAATATACTTATCCAAGAGTATGCTCGTGCTGGGCTACTCCAGAGAATGGAAAAGCTTTATCAAAGAATGGTTTCAAAAAGAATGCATGTACAGTCTTCTACTCTTGTCGCAATGCTGGAGGCTTATACCACATTTGGGATGGTTGAAAAGATGGAAAATTTTTATAGAAAAATCTTGAGCTCAAAAACATGTCTAGAGGATGATTTGATTAGAAAAGTGGCTGAAGTTTATATCAAGAACTACATGTTTTCTAGATTAGAGGACCTGGCACTAGATTTATGTCCAGCATTTGGTGAGAGCAACCTTGTATGGTGTCTCCGTCTTCTTTCTTATGCATGTCCTTTGAGTAAAAAAGGTATGGATATAGTTGTTCGAGAAATGCGAGATGCAAAGGTTAATTGGAATGTCACTGTTGCAAATATTATCATGTTGGCTTATGTGAAGATGAAAGATTTCAGGCATTTGAAAATTTTGCTATCTCAGTTGCCAATCTACCGGGTGCAGCCTGATATAATCACTATTGGAATTCTATTTGATGCCACTAGAATTGGTTTTGATGGTAGTGGAGCTTTAGAAACATGGAGAAGAATGGGCTATCTATACAGAGTAGTAGAAATAAAAACAGATTCTCTGGTCCTTACGGCATTTGGGAAAGGTCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCTTCCCTTCACCCTGAGGACAGAAAAAGGAAAACATGGACTTACCATGATCTCATTGCTTTATTGTCAAAACATACTGGTACCATCGACTGTATAAAACCTAGATAG 1530 0.398 MVNALSHNQSHFLVVLLNSNSNCRGSKSGNNTVFRKPFVKFRTLTTQICHSSYHRFADTKHTTLLVETYHLHDSLRALLAKLQKEDCNPLHVLAEDGDWSKDHFWAVVRFLKSASRFTQILQVFDMWKNIEKSRISEFNYNKIIGLLCEGGKMEDALSALRDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQMYDEMGECVKKMELEGCSPDHITYNILIQEYARAGLLQRMEKLYQRMVSKRMHVQSSTLVAMLEAYTTFGMVEKMENFYRKILSSKTCLEDDLIRKVAEVYIKNYMFSRLEDLALDLCPAFGESNLVWCLRLLSYACPLSKKGMDIVVREMRDAKVNWNVTVANIIMLAYVKMKDFRHLKILLSQLPIYRVQPDIITIGILFDATRIGFDGSGALETWRRMGYLYRVVEIKTDSLVLTAFGKGHFLKSCEEVYSSLHPEDRKRKTWTYHDLIALLSKHTGTIDCIKPR* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0029 509 Pfam PPR repeat 237 268 IPR002885 -
Gso18g0029 509 Gene3D Tetratricopeptide repeat domain 94 224 IPR011990 GO:0005515
Gso18g0029 509 Gene3D Tetratricopeptide repeat domain 225 334 IPR011990 GO:0005515
Gso18g0029 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Gso18g0029 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 14 501 - -
Gso18g0029 509 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 501 - -
Gso18g0029 509 Gene3D Tetratricopeptide repeat domain 345 505 IPR011990 GO:0005515
Gso18g0029 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Gso18g0029 509 Pfam PPR repeat family 174 217 IPR002885 -
Gso18g0029 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Gso18g0029 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Gso18g0029 509 TIGRFAM PPR: pentatricopeptide repeat domain 209 241 IPR002885 -
Gso18g0029 509 TIGRFAM PPR: pentatricopeptide repeat domain 140 171 IPR002885 -
Gso18g0029 509 TIGRFAM PPR: pentatricopeptide repeat domain 174 206 IPR002885 -
Gso18g0029 509 TIGRFAM PPR: pentatricopeptide repeat domain 243 273 IPR002885 -
Gso18g0029 509 Pfam PPR repeat 140 168 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0029 Gso-Chr18 289333 291261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0029 116 442 Glycosyltransferase AT1G05670 21.988 3.03e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0029 - - gmx:100808924 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0029 18 289333 291261 Gso13g1595 13 31199214 31201949 GST