Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1595 ATGGTGAATGCACTCACTCACAGTCAGAGTCAGTTTGTGTTGGTGCTATTGAACTCCAATTGCAGAGGGAGCAAGAGTAGTAGCAACACCGTCTTCCGAAAACCCTTTGCGAAATTTTCATCCCTCACCACTAAAATTTGCCACGCCTCTTACCACCGTTTCGCTGACAAAAAGCACACAACCCTTCTGGTTGAGACTTACCATCTCCATCACAGCCTCAGAGCCTTACTTGCAAAGCTTGAGAACGAATATTCCAACCCTCTTCACATGCTCGCAGAAGACGCTGATTGGTCCAAAGACCATTTTTGGGCTGTTGTCAGGTTCCTTAAAAGTTCCTCAAACTTCACCCATATCCTTCAGGTGTTTGATATGTGGAAGAACATTGAGAAATCACGGATTAGTGAGTTCAACTATAACAAGATCATAGGCTTGTTATGTGAAGGAGGAAAGATGGAAGATGCATTATCTGCATTGCAAGATATGAAAGTTCAAGGTATCAAGCCTTCTTTGGACACTTACAATCCAATCATTCATGGATTATCCAGAGAAGGTAAGTTCAGTGATGCTTTACGTTTTATTGATGAGATGAAAGAATCTGGCTTAGAGCTGGATTCTGAAACCTATGATGGTTTGATTGGAGCCTATGGGAAATTTCAAATGTATGATGAGATGGGTGAGTGTGTGAAGAAGATGGAGTTGGAAGGATGTTCTCCTGATCCTATCACTTACAATATACTTATCCAAGAGTATGCTGGTGGCGGGCTACTCCAGAGAATGGAAAAGCTTTATCAAAGAATGCTTTCAAAAAGAATGCATGTCAAATCTTCTACTCTAGTTGCAATGCTGGAGGCTTATACCACATTTGGGATGGTTGAAAAGATGGAAAAATTTTATAGAAAAATCTTGAACTCAAAAACATGTATAGAGGATGATTTGATTAGAAAAGTGGCTGAAGTATATATCAATAACTTCATGTTTTCTAGATTAGAGGACCTGGCACTAGATTTATGTCCAGCTTTTGGTGAGAGCAACCTCGAATGGTGTTTCCGGCTTCTTTCTTATGCATGTCTTTTGAGTAAAAAAGGTATGGATATAGTTGTTCAAGAAATGCAAGATGCCAAGGTTAGTTGGAATGTTACTGTTGCAAATATTATCATGTTGGCTTATGTGAAGATGAAAGAATTCAGGCATTTGAGAATTTTGCTATCTCAGTTGCCAATCTACCGGGTGCAGCCTGATATAATCACTATTGGAATTCTATTTGATGCAACTAGAATTGGTTTTGATGGTAGTGGAGCTTTAGAAACATGGAGGAGAATGGGCTATCTATATAGAGTAGTAGAAATGAAAACAGATTCTCTGGTCCTTACTGCATTTGGGAAAGGCCATTTTCTTAAAAGCTGTGAAGAAGTGTACTCCTCCCTTCACCCTGAGGACAGAAAAAGGAAAACATGCACTTACCATGATCTCATTCCTTTATTGTCAAAACATACTGGTACCATCGACTGTATAAAAACCTAG 1521 0.3945 MVNALTHSQSQFVLVLLNSNCRGSKSSSNTVFRKPFAKFSSLTTKICHASYHRFADKKHTTLLVETYHLHHSLRALLAKLENEYSNPLHMLAEDADWSKDHFWAVVRFLKSSSNFTHILQVFDMWKNIEKSRISEFNYNKIIGLLCEGGKMEDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILIQEYAGGGLLQRMEKLYQRMLSKRMHVKSSTLVAMLEAYTTFGMVEKMEKFYRKILNSKTCIEDDLIRKVAEVYINNFMFSRLEDLALDLCPAFGESNLEWCFRLLSYACLLSKKGMDIVVQEMQDAKVSWNVTVANIIMLAYVKMKEFRHLRILLSQLPIYRVQPDIITIGILFDATRIGFDGSGALETWRRMGYLYRVVEMKTDSLVLTAFGKGHFLKSCEEVYSSLHPEDRKRKTCTYHDLIPLLSKHTGTIDCIKT* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1595 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Gso13g1595 506 Pfam PPR repeat 138 166 IPR002885 -
Gso13g1595 506 Pfam PPR repeat 241 270 IPR002885 -
Gso13g1595 506 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 14 499 - -
Gso13g1595 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Gso13g1595 506 TIGRFAM PPR: pentatricopeptide repeat domain 172 204 IPR002885 -
Gso13g1595 506 TIGRFAM PPR: pentatricopeptide repeat domain 207 239 IPR002885 -
Gso13g1595 506 TIGRFAM PPR: pentatricopeptide repeat domain 241 270 IPR002885 -
Gso13g1595 506 TIGRFAM PPR: pentatricopeptide repeat domain 138 169 IPR002885 -
Gso13g1595 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Gso13g1595 506 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 14 499 - -
Gso13g1595 506 Gene3D Tetratricopeptide repeat domain 223 306 IPR011990 GO:0005515
Gso13g1595 506 Gene3D Tetratricopeptide repeat domain 340 500 IPR011990 GO:0005515
Gso13g1595 506 Pfam PPR repeat family 172 215 IPR002885 -
Gso13g1595 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Gso13g1595 506 Gene3D Tetratricopeptide repeat domain 90 221 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1595 Gso-Chr13 31199214 31201949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1595 124 440 Glycosyltransferase AT1G05670 22.050 1.24e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1595 - - gmx:100789335 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0029 18 289333 291261 Gso13g1595 13 31199214 31201949 GST