LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso18g0027	ATGGCTTCTACTCACAATGAGTTTTATGCACTTATGCTAGTGGTGGTGGTTGGCTCCATGGTGGCTTCCTGTGGTGCTAACTTCAACCAAGACTTTGATCTAACATGGGGTGATCACCGTGCTAAGATATTCAATGGTGGTCAGCTTCTATCTCTTTCTCTGGACAAAGTCTCTGGCTCCGGCTTCCAATCCAAGAAAGAGTACCTATTTGGGAGGATCGATATGCAACTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCGTCTCAAGGGCCAACTCATGATGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCTTACATTCTCCACACAAACGTGTTTACCAAAGGCCAAGGGAACAGAGAGCAACAGTTCTATCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCTCAACACATCATATTCTTGGTCGATAACATTCCCATAAGGGTGTTCAAGAATGCTGAGACTATTGGCGTTCCTTTCCCGAAGAACCAACCCATGAGAATCTATTCTAGCTTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCAAAAGCACCCTTTACAGCATACTACCGCAATTTCAAAGCCACAGAGTTCTCCACCTCTTCTTCCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAGACTGAGATGGGCTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCCGCTGAGTGCAGGCGCTGA	840	0.4714	MASTHNEFYALMLVVVVGSMVASCGANFNQDFDLTWGDHRAKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTKGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNAETIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSTSSSNSFSDAAWQSNELDAYGRRRLRWAQKYFMIYNYCNDLKRFPQGIPAECRR*	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso18g0027	279	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	22	216	IPR000757	GO:0004553\|GO:0005975
	Gso18g0027	279	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	11	279	IPR044791	GO:0004553
	Gso18g0027	279	PIRSF	EndGlu_transf	1	279	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gso18g0027	279	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	102	112	IPR008263	GO:0004553\|GO:0005975
	Gso18g0027	279	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	235	277	IPR010713	GO:0005618\|GO:0006073\|GO:0016762\|GO:0048046
	Gso18g0027	279	Pfam	Glycosyl hydrolases family 16	29	209	IPR000757	GO:0004553\|GO:0005975
	Gso18g0027	279	PRINTS	Glycosyl hydrolase family 16 signature	60	78	IPR008264	GO:0004553\|GO:0005975
	Gso18g0027	279	PRINTS	Glycosyl hydrolase family 16 signature	118	131	IPR008264	GO:0004553\|GO:0005975
	Gso18g0027	279	PRINTS	Glycosyl hydrolase family 16 signature	136	153	IPR008264	GO:0004553\|GO:0005975
	Gso18g0027	279	CDD	GH16_XET	25	277	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Gso18g0027	279	SUPERFAMILY	Concanavalin A-like lectins/glucanases	26	278	IPR013320	-
	Gso18g0027	279	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15	11	279	-	-
	Gso18g0027	279	Gene3D	-	13	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso18g0027	Gso-Chr18	274473	276146	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso18g0027	10	279	Glycoside Hydrolase	AT3G23730	74.286	6.51e-164	454

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso18g0027	K08235		-	gmx:100499905	578.941

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso18g0027	18	274473	276146	Gso13g1596	13	31211688	31213297	GST