Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1596 ATGGCTTCTTCTCGAAATGAGTTTTATGCACTTATGCTAGTGGTGGTGGTTGGCTCCATAGTGGCTTCCTGTGGTGCTAACTTCAACCAAGACTTTGATCTAACTTGGGGTGATCAGCGTGCTAAGATATTCAATGGTGGTCAGCTTCTATCTCTTTCCCTGGACAAAGTCTCTGGCTCTGGCTTCCAATCCAAGAAAGAGTACTTATTTGGAAGGATCGATATGCAGCTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCGTCTCAAGGGCCAACTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCTTACATTCTCCACACAAACGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAACAATTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATCATATTCTTGGTGGATAACATTCCCATAAGGGTGTTCAAGAATGGTGAGACTATTGGCGTTCCTTTCCCAAAGAAGCAACCCATGAGAATCTATTCTAGCCTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCCTTTACAGCCTACTACCGCAATTTCAAAGCCACAGAGTTCTCCACCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAAACTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCTGTTGAGTGCAGGCGCTGA 831 0.4717 MASSRNEFYALMLVVVVGSIVASCGANFNQDFDLTWGDQRAKIFNGGQLLSLSLDKVSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNGETIGVPFPKKQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSTNSFSDAAWQSNELDAYGRRKLRWVQKYFMIYNYCNDLKRFPQGIPVECRR* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1596 276 PRINTS Glycosyl hydrolase family 16 signature 60 78 IPR008264 GO:0004553|GO:0005975
Gso13g1596 276 PRINTS Glycosyl hydrolase family 16 signature 118 131 IPR008264 GO:0004553|GO:0005975
Gso13g1596 276 PRINTS Glycosyl hydrolase family 16 signature 136 153 IPR008264 GO:0004553|GO:0005975
Gso13g1596 276 PIRSF EndGlu_transf 1 276 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso13g1596 276 ProSitePatterns Glycosyl hydrolases family 16 active sites. 102 112 IPR008263 GO:0004553|GO:0005975
Gso13g1596 276 Pfam Glycosyl hydrolases family 16 29 209 IPR000757 GO:0004553|GO:0005975
Gso13g1596 276 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 11 276 - -
Gso13g1596 276 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 22 216 IPR000757 GO:0004553|GO:0005975
Gso13g1596 276 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 11 276 IPR044791 GO:0004553
Gso13g1596 276 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 232 274 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Gso13g1596 276 Gene3D - 14 276 - -
Gso13g1596 276 CDD GH16_XET 25 274 IPR016455 GO:0010411|GO:0016762|GO:0042546
Gso13g1596 276 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 275 IPR013320 -
Gso13g1596 276 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1596 Gso-Chr13 31211688 31213297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1596 10 276 Glycoside Hydrolase AT3G23730 73.571 8.42e-159 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1596 K08235 - gmx:100784191 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0027 18 274473 276146 Gso13g1596 13 31211688 31213297 GST