Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0007 ATGTGCACGGTGGTTTCAAGTTCAATCCTTGTGGGATGGCTTTCTTCTTATCCCAAAACGAAAAGGAGCGTTGGCAATGGCATAAGCCATTTAAGCCCCGCTATATCCGTAGCAGCCACAGCTATGGCTAAAGATGTGTGGACCCGAACATCCTCTTCCAACACCAGTAGGCAACGTAGTAGAAGGCAGCAGTACTGGGACCGCAGCGTTGACATGGAAGAGCTATTAGCGGCAATTGGACAGACCCAGAACGAGGATGAACTGTATGCGGTTATGTCTCCCTACAACGGGAGGCAGTTATCCATGCGCTTCATGGTTTCCCTGCTGTCCCGCGAGCCCGATTGGCAACGTGCTCTTGCCCTTCTCGATTGGATCAACGACAAGGCCCTCTATTCTCCCTCCCTCTTCGCCTACAACGTCCTTCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGATGAAATGCGCCAAAAGGGCCTCTCCCCAGATAGGTACACTTACTCCACCCTCATCACTTCTTTCGGCAAACACGGCTTGTTTGATTCTTCCCTCTTTTGGCTCCAGCAGATGGAGCAAGACAATGTCTCCGGCGACCTTGTCCTCTACAGTAACTTGATTGACCTTGCCCGCAAGTTGTCCGATTATTCCAAGGCCATTTCCATCTTCTCCAGATTGAAAGCCTCCACTATTTCCCCCGACCTCATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGCGAGGCTCGCCTTCTTCTTCAAGAGATGAGAGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACCCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAAGCACTTTCTTTATTCTTCGAAATGAATGAAGCCAAATGCCCTCTTGATCTCACCACTTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCCGACCGCCTCTTCTGGAGTATGAGGAAAATGGGGATTCAACCCAACGTCGTTAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTTGGGGAAGCCATCCATCTGTTCCGTTTGATGCAAAGTAAGGATGTACAACAGAATGTCGTCACCTACAACACTATGATTAATATTTATGGCAAGACTCTTGAGCACGAGAAGGCTACCAATCTCATTCAAGAAATGAAGAAAAGGGGTATTGAACCCAATGCCATCACCTATTCCACCATAATTTCTATATGGGAGAAGGCAGGGAAACTGGACCGCGCTGCCATCTTGTTTCAGAAATTAAGGAGTTCAGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGGCAGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCAGATAACATTCCCAGGGACACTGCGATCGGAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTCGAGAGGTCAAAGATATATCTGTGTTTGGTTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATGGCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGTGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTTGTGTTGAATGCTTTTGGAAAGTTGCGTGAATTTGATAAAGCAGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCGTGATGGTAGAGTCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCTTCCCGAATAATGAATAGGATGAATCAAAAAGCAAACAGAAGTCATTATCATGCTTAG 1977 0.4578 MCTVVSSSILVGWLSSYPKTKRSVGNGISHLSPAISVAATAMAKDVWTRTSSSNTSRQRSRRQQYWDRSVDMEELLAAIGQTQNEDELYAVMSPYNGRQLSMRFMVSLLSREPDWQRALALLDWINDKALYSPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTISPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFFEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMKKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRDTAIGILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYGNVVEVFEKMRVVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMNQKANRSHYHA* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Gso18g0007 658 SUPERFAMILY HCP-like 192 410 - -
Gso18g0007 658 Pfam PPR repeat family 379 422 IPR002885 -
Gso18g0007 658 Pfam PPR repeat family 133 180 IPR002885 -
Gso18g0007 658 Pfam PPR repeat family 238 282 IPR002885 -
Gso18g0007 658 Pfam PPR repeat family 309 353 IPR002885 -
Gso18g0007 658 Gene3D Tetratricopeptide repeat domain 77 215 IPR011990 GO:0005515
Gso18g0007 658 Pfam PPR repeat 451 478 IPR002885 -
Gso18g0007 658 Pfam PPR repeat 518 545 IPR002885 -
Gso18g0007 658 Pfam PPR repeat 557 582 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Gso18g0007 658 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 35 651 - -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 346 378 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 137 169 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 557 586 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 518 550 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 242 275 IPR002885 -
Gso18g0007 658 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Gso18g0007 658 Gene3D Tetratricopeptide repeat domain 361 482 IPR011990 GO:0005515
Gso18g0007 658 Gene3D Tetratricopeptide repeat domain 483 658 IPR011990 GO:0005515
Gso18g0007 658 Gene3D Tetratricopeptide repeat domain 216 360 IPR011990 GO:0005515
Gso18g0007 658 PANTHER OS03G0856100 PROTEIN 35 651 - -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Gso18g0007 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0007 Gso-Chr18 109742 112013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0007 157 612 Glycosyltransferase AT1G05670 22.391 1.04e-35 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0007 - - gmx:100782934 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0007 18 109742 112013 Gso13g1616 13 31373102 31375655 GST