Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1616 ATGTGCACGGTGGTTTCAAGTTCAGTCCTTGTGGGATGGCTTTCTTCTTGTTCTAAAACGAAAGGGAGCGTTGGCAATGGCATAAGCCATTTAAGCCCTGCCACTCGTGCTATATCCGTACTAGCCACGGCTATGGCTAAAGATGTGTGGACCCGAACATCATCTTCCAACACCAGTTGGCAACGTAGTAGTAGTAGTAGTAGAAGGCAGCAGCAGTACTTGGACCGCAGCGTGGACATGGAAGTGCTATTAGCGGCAATTGGACAGACCCAGAACGAGGATGAACTGTATGCGGTTATGTCTCCCTACAACGGGAGGCAGTTATCCATGCGCTTCATGGTTTCCCTGCTATCCCGCGAGCCTGATTGGCAACGCGCTCTTGCCCTTCTCGATTGGATCAACGACAAGGCCCTCTATCGTCCCTCCCTCTTCGCCTACAACGTCCTTCTCCGCAACGTCCTTCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGATGAAATGCGCCAAAAGGGCCTCTCCCCCGATAGGTACACTTACTCCACCCTAATTACTTGTTTCGGCAAACACGGCTTGTTTGATTCTTCCCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTCTCCGGCGACCTCGTTCTCTACAGTAACTTGATTGACCTTGCCCGCAAGTTGTCCGATTATTCCAAGGCCATTTCTATCTTCTCCAGATTGAAAGCCTCCACTATTACCCCCGACCTTATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGTGAGGCTCGCCTTCTTCTTCAAGAGATGAGAGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACCCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAAGCACTTTCTCTATTCTCCGAAATGAATGAAGCTAAATGCCCTCTTGATCTCACCACTTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAACGTCATTAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTTGGGGAAGCCATCCATCTATTCCGTTTGATGCAAAGTAAGGATGTACAACAAAATGTTGTCACCTACAACACTATGATTAATATTTATGGCAAGACTCTCGAGCACGAGAAGGCTACAAATCTCATTCAAGAAATGAATAAAAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCTATATGGGAGAAGGCAGGGAAACTGGACCGTGCTGCCATCTTGTTTCAGAAATTAAGGAGTTCTGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGACGGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGACACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTCGAGAGGTCAAAGATATATCTGTGTTTGGTTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATGCCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCGGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCGTGATGGTAGAATCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCATCCCGAATCATGAATAGGATGAATAAAAAAGCAAACAGAATTCATGATCATGCTTAG 2016 0.4559 MCTVVSSSVLVGWLSSCSKTKGSVGNGISHLSPATRAISVLATAMAKDVWTRTSSSNTSWQRSSSSSRRQQQYLDRSVDMEVLLAAIGQTQNEDELYAVMSPYNGRQLSMRFMVSLLSREPDWQRALALLDWINDKALYRPSLFAYNVLLRNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMNKKANRIHDHA* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Gso13g1616 671 PANTHER OS03G0856100 PROTEIN 38 664 - -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Gso13g1616 671 Pfam PPR repeat 570 595 IPR002885 -
Gso13g1616 671 Pfam PPR repeat 464 491 IPR002885 -
Gso13g1616 671 Pfam PPR repeat 531 559 IPR002885 -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Gso13g1616 671 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 38 664 - -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Gso13g1616 671 SUPERFAMILY HCP-like 206 419 - -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Gso13g1616 671 Gene3D Tetratricopeptide repeat domain 493 671 IPR011990 GO:0005515
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Gso13g1616 671 Gene3D Tetratricopeptide repeat domain 420 492 IPR011990 GO:0005515
Gso13g1616 671 Gene3D Tetratricopeptide repeat domain 347 419 IPR011990 GO:0005515
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Gso13g1616 671 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Gso13g1616 671 Pfam PPR repeat family 322 366 IPR002885 -
Gso13g1616 671 Pfam PPR repeat family 251 295 IPR002885 -
Gso13g1616 671 Pfam PPR repeat family 152 193 IPR002885 -
Gso13g1616 671 Pfam PPR repeat family 392 435 IPR002885 -
Gso13g1616 671 Gene3D Tetratricopeptide repeat domain 230 337 IPR011990 GO:0005515
Gso13g1616 671 Gene3D Tetratricopeptide repeat domain 91 229 IPR011990 GO:0005515
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 152 182 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 255 288 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 570 599 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 289 322 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 531 563 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 394 428 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Gso13g1616 671 TIGRFAM PPR: pentatricopeptide repeat domain 359 391 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1616 Gso-Chr13 31373102 31375655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso13g1616 170 625 Glycosyltransferase AT1G05670 22.174 6.72e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1616 - - gmx:100784025 1260.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0007 18 109742 112013 Gso13g1616 13 31373102 31375655 GST