Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0006 ATGATGAGTTTATCATTTTGTTCGCTGATAGCAAAGCCTTGTTCCATGATCAATGGGAGCAATAGGAAACCATGTTGTGGTCGTACAAGATTTGGTGTTATAATTAGGTCGGAAGTAAACGTGGCTCCCAAGCAAAGAGGAATTCCCCAATTGTCAAAACAAGGAGTTCCTCTTGCTGTACAAGAGGTTGTTCACAGGCAGTCTCAGATCATAAATCATTGTAGCAAGCCTAGGCCACTGTTCGAGCCCACTTTTCTTTATGATGCCTATGAAATGTGCAGAAATATTTGCGCCGAATATGCCAAGACCTTTTATCTAGGAACCTTGCTTATGACGGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAACTTGTTGATGGTCCTAACGCTGGGTATATGAGCTCTTCTGTTCTTGATAGGTGGGAAGATAGATTGCACGACATTTTCAATGGACAACCCTATGATATGCTTGATGCCGCTCTTACTGATACAGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAAGGACATGATACAAGGCATGAGAATGGATACAAGGAAAGCCCGATACAACAATTTCCAAGAGTTATATCTTTACTGCTACTATGTGGCGGGAACTGTGGGCTTAATGACTGTTCCAATAATGGGCATTGCCCAGGAGTCTGTCATCCCAGTTCAAAGTGTATATGATGCTGCACTATATCTGGGTGTAGGAAATCAACTCACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGACGAACTAGCCCAGTTTGGATTATGTGACAAGGATGTTTTTTCAAGAAACGTCAGTGAAAGATGGAGAAAGTTTATGAAATATCAGATCACAAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTCCAAAAGGCCAGCCGTTGGCCGGTTTGGTCATCATTAATATTGTATCGTAAGATCTTGGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCTTACGTGGGACGAGCTAAGAAATTTTTAACGTTGCCTCTAGCTTACACTAGATCTCTCTCAAATCACAAAACGAAATTTCGTTCTTTAACAAGGCCTATCTAG 1155 0.419 MMSLSFCSLIAKPCSMINGSNRKPCCGRTRFGVIIRSEVNVAPKQRGIPQLSKQGVPLAVQEVVHRQSQIINHCSKPRPLFEPTFLYDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAGYMSSSVLDRWEDRLHDIFNGQPYDMLDAALTDTVSKFPLDIKPFKDMIQGMRMDTRKARYNNFQELYLYCYYVAGTVGLMTVPIMGIAQESVIPVQSVYDAALYLGVGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRNVSERWRKFMKYQITRARFYFNRAEEGVSQLQKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRAKKFLTLPLAYTRSLSNHKTKFRSLTRPI* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0006 384 CDD Trans_IPPS_HH 91 358 IPR033904 GO:0004311
Gso18g0006 384 Pfam Squalene/phytoene synthase 100 355 IPR002060 GO:0009058
Gso18g0006 384 SFLD Isoprenoid Synthase Type I 88 369 - -
Gso18g0006 384 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 6 376 - -
Gso18g0006 384 SFLD Phytoene synthase like 88 369 IPR044843 GO:0004311
Gso18g0006 384 Gene3D Farnesyl Diphosphate Synthase 84 364 IPR008949 -
Gso18g0006 384 SUPERFAMILY Terpenoid synthases 88 371 IPR008949 -
Gso18g0006 384 ProSitePatterns Squalene and phytoene synthases signature 2. 244 269 IPR019845 GO:0016765
Gso18g0006 384 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 6 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0006 Gso-Chr18 105591 107796 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0006 K02291 - gmx:100782394 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0006 18 105591 107796 Gso13g1617 13 31379021 31381656 GST