Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1927 ATGGAACGTGGCTTCCCCAAAGGCAAGTTCAAGAGCCTCTGTGTCTTTTGCGGCAGCAACTCTGGCAACCGTCAAGTTTTCAGTGACGCTACCATTGAATTGGCCAATGAACTGGTTAAGAGGAACATTGACTTGGTGTATGGTGGGGGAAGTGTTGGGCTGATGGGCCTAATATCCCAGAGAATGTATGATGGAGGCTGCCATGTTCTAGGGGTTATTCCAAAAGCTCTCATGCCTCTTGAGATATCTGGTGAACCAGTTGGTGAAGTAAGAATTGTTTCAGATATGCATGAGCGTAAAGCTGCAATGGCTCAAGAAGCTGATGCATTTATCGCCCTCCCTGGAGGATATGGAACTATGGAAGAGCTGTTGGAGATGATAACTTGGGCTCAACTTGGAATTCATAAAAAACCGGTTGGTCTACTCAATGTTGATGGTTACTATAACTCTTTGCTCGCATTATTTGACAATGGTGTTGAAGAAGGCTTCATTAAGCATGGTGCTCGGAATATACTTGTTGCGGCTTCATCAGCCAAAGAACTTATGATGAAGATGGAGCAATATTCTCCTTCCCATGAACATGTAGCTCCTCATGATAGCTGGCAGACAAGGCAATTGGGTAATTATGCAGAACAGGAAAATGCAGAATGA 651 0.4439 MERGFPKGKFKSLCVFCGSNSGNRQVFSDATIELANELVKRNIDLVYGGGSVGLMGLISQRMYDGGCHVLGVIPKALMPLEISGEPVGEVRIVSDMHERKAAMAQEADAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKHGARNILVAASSAKELMMKMEQYSPSHEHVAPHDSWQTRQLGNYAEQENAE* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1927 216 MobiDBLite consensus disorder prediction 201 216 - -
Gso17g1927 216 Pfam Possible lysine decarboxylase 55 185 IPR031100 -
Gso17g1927 216 SUPERFAMILY MCP/YpsA-like 10 188 - -
Gso17g1927 216 MobiDBLite consensus disorder prediction 192 216 - -
Gso17g1927 216 TIGRFAM TIGR00730: TIGR00730 family protein 11 188 IPR005269 GO:0009691|GO:0016787
Gso17g1927 216 PANTHER LOG FAMILY PROTEIN YJL055W 8 206 - -
Gso17g1927 216 Gene3D - 10 204 - -
Gso17g1927 216 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 8 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1927 Gso-Chr17 38356010 38364046 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1927 K22522 - gmx:100819765 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1927 17 38356010 38364046 Gso4g0450 4 4258093 4260748 PCT
Gso17g1927 17 38356010 38364046 Gso6g0431 6 3994586 3997515 PCT
Gso4g0450 4 4258093 4260748 Gso17g1927 17 38356010 38364046 PCT
Gso6g0431 6 3994586 3997515 Gso17g1927 17 38356010 38364046 PCT