Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1913 ATGGGTGAAGCTCCAGAGGTGTTCTACATTAATGGGTTCTCAAAGTTTGAACATGAAATTGAAACCCAACAAAACCATCATGTGAATGATCAGAACCATGATTCTTCTTGGTACGAGGAAATCATCGATGAGGATCTAAAATGGTCTTTTAAACTCAACAGTGTGCTCCATAAAGCCATTAGCGAGTACCAGGACATAGCTCTCTTAGATACAAAGCGTTTTGGAAAGGCCTTGGTGCTTGATGGAAAGATGCAGAGTGCTGAAACGGACGAATTTATTTATCATGAATGCTTGATTCATCCACCTCTTTTATGCCATCCTAATCCCAAGACTGTGTTTATAATGGGGGGAGGTGAAGGTTCTGCTGCTAGGGAAGCCCTTAAGCACAGGTCAATGGTCAGAGTGGTCATGTGCGATATAGACAAGGAGGTGGTAGATTTCTGCCGAAAATACTTGATTGCAAATAAGGAGGCGTTTTCTCATAAGAAGCTCGACCTTGTCATTAATGATGCCAAGGCTGAATTGGAGAAAAGAAAGGAGAAGTTTGATATCATCGTTGGAGATTTGGCAGACCCACTTGAAGATGGGCCTTGCTATCAACTCTACACCAAATCCTTCTACGAGAAGATCCTGAAGCCCAAGCTCAATGATAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGTATCTTCACACACAAGGAGGTCTTCACTTCTATATATAACACAGTCAAACAGGTTTTCAAATATGTGATTGCATACACGACTCATGTACCATCATTTGCTGACACATGGGGTTGGGTTATGGCTTCGGACCAACCACTATCGATTTGCGCTGATGAAATGGACAGAAGAATCGAAGCAAGAATAGATGGGGAACTTCTCTATCTAAATGGTGCTTGGTTCCATTCATCTACAACTATGAACAAAACTGTTTACCAATCGCTGCAAAATGAAACTCACGTGTACACAGAAGAAAATGCTAGATTTATTCCTGGACATGGCATGGCTTTTCATCTCTAA 1023 0.4194 MGEAPEVFYINGFSKFEHEIETQQNHHVNDQNHDSSWYEEIIDEDLKWSFKLNSVLHKAISEYQDIALLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPPLLCHPNPKTVFIMGGGEGSAAREALKHRSMVRVVMCDIDKEVVDFCRKYLIANKEAFSHKKLDLVINDAKAELEKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKILKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTVKQVFKYVIAYTTHVPSFADTWGWVMASDQPLSICADEMDRRIEARIDGELLYLNGAWFHSSTTMNKTVYQSLQNETHVYTEENARFIPGHGMAFHL* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1913 340 Gene3D Vaccinia Virus protein VP39 88 339 IPR029063 -
Gso17g1913 340 Gene3D Spermidine synthase, tetramerisation domain 35 87 IPR037163 -
Gso17g1913 340 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 1 338 - -
Gso17g1913 340 Pfam Spermidine synthase tetramerisation domain 37 88 IPR035246 -
Gso17g1913 340 CDD AdoMet_MTases 116 224 - -
Gso17g1913 340 Hamap Polyamine aminopropyltransferase [speE]. 36 317 IPR001045 GO:0003824
Gso17g1913 340 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 35 272 IPR030374 -
Gso17g1913 340 Coils Coil 161 181 - -
Gso17g1913 340 PANTHER BNAA02G04280D PROTEIN 1 338 - -
Gso17g1913 340 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 36 317 IPR029063 -
Gso17g1913 340 Pfam Spermine/spermidine synthase domain 91 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1913 Gso-Chr17 38041010 38046627 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1913 K18787 - gmx:100815510 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0869 14 9976377 9981639 Gso17g1913 17 38041010 38046627 GST