Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1870 ATGCTTGTTGCGGTTGGAGCGTCGTGGGATCTGAATTGGTTCCTGCAACTGTTGCTCTCCGTCATCGTCGTGGCCGTTGGGGTTCACTATTTCGTCAAGGCCACCGCTTCCAAGTACTTCTTAGTCGACGCCAATTTCGAAGGGGACCACCACGCCCTCGCCGCCGCCGACCCAATGCCCGGCGCTCTCGCCGCCGCCGCTGATCCTCTCTGCGCCGTCTGTGCCACGCCCGCCCCTAAGAAATGCTCGCGCTGCAAAGCTGTCAGATATTGTTCACAAGCATGTCAGCAGTCGCATTGGATGTCTGGGCATAAGACAGTGTGCAAGAATTTTCATGGGACCAATGCAAGAAGCTCGGCTCAGAATGGGGTAATTAATCGTGGGTTTAAGACTTCTGCTGCTGGGGGTAAAGGCTCGTCGTCAATTGCACTGATACCTGACTGTGGAGATGGAGCAATTTCCAGGCCAATCAAGCAGGCTAAAGATGTTCTTTTTCCTTACGATGAATTTGTCAAGTTTTTCAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTATTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAAGCCACTTGTTGCCTACTTGTTGGAGAAGGGCCACCGCAGAGAATGCAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGAAAGAACAAGGCTAAGTTCACAGGCGTTTTCTCCTATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACACTGGGCTATGGAAAACAAGAGGATGCTCACGAGTTCATGAGGTTTTCCATTGATACGATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAGGAGACCACCCTTATTCAACACATTTTTGGTGGTCGTCTTCAATCTGAGGTGATTTGCACAAAATGTGATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAAGGAGCGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAAGCATGGAAACGCCTTACGGTGAAATGCGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAGCCTTCCCTGAAACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGATATTTATAAGCTATATGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGTTACATCAAGGATTTCCAGGGAAACTGGTATAGGATTGATGACTGGAAGGTTATGACTGTGGAGGTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTCTTGTATAGCAGGTGTAGTGCCCGGACATCAAGCTTTCAAATTCAAACTAGCGAATCTTCAGGGATAGCAGAAGTTCAGACAGAAGTGGAAGTGGAAATGGAAGTGGAGCCCGGACAAACTGAACAAGATGAATGCCTCTCAAATATGAAGGCTTTGACTTGTAGTAGAGGTTCTGAGGTTTTGCCATCTGATGCTAGTCCAGAATTGAAGGTTTCTTCCAGCTATGACTGCGAGTCTTCTGCTGGATTGAACTCACAAGCCAAAAGAGAACAGTTTGAGGATGTGAACATGATGGATGTTGATTCAACTGGTATTGCAAATGAGCTTTCTTGTGGTGCTGTTGAATCATCTTATGTGCCTATTTCTCAAACAGACAGTGATTTGGGGGATGTGGATATGGGCAGATCATTAGAAGAGACTTCAGGCTGCAAGCAAGAGCAAGATGATACTGATATGGTTAGGTCTGGTTCTTGTTCGGGTCTACCAAATGGCTCTTCCTTCTTTGATAAGCACCCTTCCGTTTCACGGGATCATCAAAACATGGAAGAACATTCAGAACATATAGATGTGGTTAACTGCAAGTTGATTACAGCTAAAGATAATGCATACTATGGTAATGGATATGTCAGTGCAAACGATTCTTCAATGCCAGTTGAAGACGCAGGCACACAATTTTCTGGCATCAGTTCTTTTCCCACTGAAAATGACAAAGGAAATGGAATTAAGAAAGTGGAAATATCAGCTGACATTTAG 2208 0.4407 MLVAVGASWDLNWFLQLLLSVIVVAVGVHYFVKATASKYFLVDANFEGDHHALAAADPMPGALAAAADPLCAVCATPAPKKCSRCKAVRYCSQACQQSHWMSGHKTVCKNFHGTNARSSAQNGVINRGFKTSAAGGKGSSSIALIPDCGDGAISRPIKQAKDVLFPYDEFVKFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTRLSSQAFSPMNILSRLPNIGGTLGYGKQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVICTKCDKISNQYENMMDLTVEIHGDAASLEECLDQFTAKERLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSPYMSEAGDGSDIYKLYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEEVLSQGAYMLLYSRCSARTSSFQIQTSESSGIAEVQTEVEVEMEVEPGQTEQDECLSNMKALTCSRGSEVLPSDASPELKVSSSYDCESSAGLNSQAKREQFEDVNMMDVDSTGIANELSCGAVESSYVPISQTDSDLGDVDMGRSLEETSGCKQEQDDTDMVRSGSCSGLPNGSSFFDKHPSVSRDHQNMEEHSEHIDVVNCKLITAKDNAYYGNGYVSANDSSMPVEDAGTQFSGISSFPTENDKGNGIKKVEISADI* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1870 735 ProSitePatterns Zinc finger MYND-type signature. 71 108 IPR002893 -
Gso17g1870 735 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 184 490 IPR028889 -
Gso17g1870 735 CDD Peptidase_C19E 183 488 - -
Gso17g1870 735 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 671 - -
Gso17g1870 735 Pfam MYND finger 71 108 IPR002893 -
Gso17g1870 735 Pfam Ubiquitin carboxyl-terminal hydrolase 184 487 IPR001394 GO:0004843|GO:0016579
Gso17g1870 735 SUPERFAMILY Cysteine proteinases 180 491 IPR038765 -
Gso17g1870 735 ProSiteProfiles Zinc finger MYND-type profile. 71 108 IPR002893 -
Gso17g1870 735 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 185 200 IPR018200 GO:0004843|GO:0006511
Gso17g1870 735 Gene3D Cysteine proteinases 180 502 - -
Gso17g1870 735 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 671 - -
Gso17g1870 735 Gene3D - 63 112 - -
Gso17g1870 735 SUPERFAMILY HIT/MYND zinc finger-like 69 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1870 Gso-Chr17 37444621 37451901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1870 5 496 Miscellaneous Gene Families AT4G31670 64.516 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1870 K11855 - gmx:100799652 1466.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0916 14 11250658 11257971 Gso17g1870 17 37444621 37451901 GST