Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso14g0916 ATGCTTGTTGCGGTTGGAGCGTCGTGGGATCTGAATTGGTTCCTGCAATTGTTGCTCTCCGTCATCGTCGTGGCCATTGGGGTTCACTACTTCGTCAAGGTCACCGCTTCCAAATACTTCTTGGTCGACGCCAATTTCGAAGGGGACCACCACCACGCCCTCGCCACCGACGCCATGCCCGGTGCCCTCGCTGCCGCCGATCCTCTCTGTGCCGTCTGCGCCACGCCAGCCCCTAAGAAGTGCTCGCGCTGCAAAGCCGTTAGATATTGTTCGCAAGCATGTCAGCAGTCTCACTGGATGTCTGGGCATAAGACAGTGTGCAAGGATTTTCGTGAGACCAGTGCAAGAAGCTCGGCTCAGAATGGGGTAATTAATCGTGGGTTTAAGGCTTCTGCTGCTGGGGGTAAAAGCTTATCAACGATTGCGCTGATACCTGGCTGTGGAGCAGGAGCAATTTCCAGGCCAATCAAGCAGGCTAAAGATGTTCTTTTTTCTTACGATGAATTTGTCAAGTTTTTCAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAAGCCACTTGTCGCCTACTTGTTGGAGAAGGGCCACCGTAGAGAATGCAGTTGTAATGATTGGTGCTTCCTATGTGAATTTGAAAATCATGTTGAAAGAACAAGGCTAAGTTCACAGGCATTTTCTCCCATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACACTGGGCTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAGGAGACCACCCTTATTCAACACATTTTTGGTGGTCGTCTTCAATCTGAGGTGATTTGCACAAAATGTAATAAGATTTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAGTTTACTGCCAGGGAGCGGCTTGATGGGGAAAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAAGCATGGAAACGCCTTACTGTGAAATGCGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATATCCTTCCCTGAGACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGATATTTATAAGCTATACGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGTTACATCAAAGATTTCCAGGGAAACTGGTATAGGATTGATGACTGGAAGGTTATGACTGTGGAGGTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTCTTGTATAGCAGGTGTAGTGCCCGGCCATCAGGCCTTCAAATTCAAACTAGTGAATCTTCAGGGATAGCAGAAGTTCAAACAGAAGTGGAAGTGGAGCCTGGACAAACTGAACAAGATGAATGCCTCTCAAATATGAAGGCTTTGACTTGTAGTAGAGGTTCTGAGGTTTTGCCATCTGATGTTAGTCCAGAATTGAAGGTTTCTTCCAGCTATGACTGTGAGTCTTTTGCTGGATTGAACTCACCAGTCAAAAGAGAACAGTTTAATGATGTGGACATGATGGATGTTGATTCAACTGGTATTGTGAATGAGATTTCTTGTGGTGCTGTTGAATCATCTTATGTGCCCATTTCTCAAACAGACAGTGATTTGGGGGATGTAGATATGGGCAGATCATTAGAAGAGACTTCAGGCTGCAAGGAAGAGCAAGATGATACTGATATGGTTAGTTCTGGTCTTTGTTCGGGTCCACCAAATGACAATTCCTTTGATAAGCACCCTTCCGTTTCACGTGATCATCAAAACATGGAAGAAGATTCAGAACATATCGATGTGGTTAACTGCAAGTTGATTACAGCCAAAGATAATGCATGCTATTCTAATGGATATGTCAGTGCAAATGAGCCTTCAATTCCAGTTGAAGACGCAGGCTCACAAATTTCTGGCATCAGTTCTTTTCCCACTGAAAATGACAAAGGAAATGGAATTAAGAAAGTGGAAATATCAGCCGACATCTAG 2190 0.4379 MLVAVGASWDLNWFLQLLLSVIVVAIGVHYFVKVTASKYFLVDANFEGDHHHALATDAMPGALAAADPLCAVCATPAPKKCSRCKAVRYCSQACQQSHWMSGHKTVCKDFRETSARSSAQNGVINRGFKASAAGGKSLSTIALIPGCGAGAISRPIKQAKDVLFSYDEFVKFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTRLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGRLQSEVICTKCNKISNQYENMMDLTVEIHGDAASLEECLDQFTARERLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRISFPETLNLSPYMSEAGDGSDIYKLYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEEVLSQGAYMLLYSRCSARPSGLQIQTSESSGIAEVQTEVEVEPGQTEQDECLSNMKALTCSRGSEVLPSDVSPELKVSSSYDCESFAGLNSPVKREQFNDVDMMDVDSTGIVNEISCGAVESSYVPISQTDSDLGDVDMGRSLEETSGCKEEQDDTDMVSSGLCSGPPNDNSFDKHPSVSRDHQNMEEDSEHIDVVNCKLITAKDNACYSNGYVSANEPSIPVEDAGSQISGISSFPTENDKGNGIKKVEISADI* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso14g0916 729 ProSiteProfiles Zinc finger MYND-type profile. 70 107 IPR002893 -
Gso14g0916 729 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 184 199 IPR018200 GO:0004843|GO:0006511
Gso14g0916 729 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 183 489 IPR028889 -
Gso14g0916 729 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 20 709 - -
Gso14g0916 729 SUPERFAMILY Cysteine proteinases 179 491 IPR038765 -
Gso14g0916 729 Gene3D - 62 112 - -
Gso14g0916 729 MobiDBLite consensus disorder prediction 706 729 - -
Gso14g0916 729 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 709 - -
Gso14g0916 729 Gene3D Cysteine proteinases 179 497 - -
Gso14g0916 729 CDD Peptidase_C19E 182 487 - -
Gso14g0916 729 Pfam Ubiquitin carboxyl-terminal hydrolase 183 486 IPR001394 GO:0004843|GO:0016579
Gso14g0916 729 ProSitePatterns Zinc finger MYND-type signature. 70 107 IPR002893 -
Gso14g0916 729 SUPERFAMILY HIT/MYND zinc finger-like 67 111 - -
Gso14g0916 729 Pfam MYND finger 70 107 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso14g0916 Gso-Chr14 11250658 11257971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso14g0916 5 494 Miscellaneous Gene Families AT4G31670 65.918 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso14g0916 K11855 - gmx:100820594 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g0916 14 11250658 11257971 Gso17g1870 17 37444621 37451901 GST