Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1619 ATGGTGAATTCCATGGTGGAACGCGCCACGAGCGACATGCTCATAGGGCCTGATTGGGCCATGAACATCGAGATCTGCGACATGCTCAATCATGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAAATTCAAAAGTTCAACTTCTTGCACTAACTTTGTTGGAGACAATCATAAAGAACTGTGGAGATATTGTTCACATGCATGTTGCAGAAAGAGATGTGCTTCATGAGATGGTGAAAATAGTAAAGAAAAAGCCTGATTTTCATGTCAAAGAAAAGATACTGGTTCTTGTAGATACTTGGCAAGAAGCTTTTGGAGGCCCAAGGGCAAGATATCCACAATATTATGCTGCATACCAGGAACTGTTGCGTGCTGGGGCAGTATTCCCTCAGAGGTCGGAACAATCTGCACCTGTATTCACACCTCCACAAACACAGCCATTGGCATCTTACCCTCAAAATATACGCGACACAAATGTTGACCAGGACGCAGCTCAGTCCTCTGCAGAGTCTGAGTTTCCAACACTCAATTTGACTGAAATTCAGAATGCACGTGGCATCATGGATGTTCTTGCAGAAATGCTCAATGCCTTAGACCCTAGTAACAAAGAAGGGATTAGACAGGAGGTTATTGTTGATTTGGTGGAGCAGTGTCGAACTTACAAGCAGAGAGTGGTTCACCTTGTCAACTCAACTTCGGATGAATCACTGCTATGCCAAGGACTAGCCCTGAATGATGATCTTCAGCGTGTACTGGCCAAGCACGAATCTATTTCTTCTGGAATTTCTACCAAAAACGAAAATCACACTGAGAATTTGAATCCTTCACTTGCACCTGCTGGAGCTCTTGTAGACATTGATGCTCCTTTGGTTGATACTGGAGATACTAGCAAACAAACTGATGGGAGATCCTCTTCTAATGTTGAAGCAGGGTCCCAAACATTGAATCAGTTACTACTTCCTGCACCTCCAACTTCTAATGGTTCAACAATTCCTGCCAAGGTTGATCCCAAATGGGACCTGCTCAGTGGCGATGACTATAACTCACCAAAAGCGGATTCATCAAATGCTCTTGTTCCTCTAGGAGAACAACCAACTGCCAGTCCTGTTTCTCAGCAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAATAATGCACCTACATCTGTCAATTCCCAGCCACCCCATCCAGCTAATGTTGCTGGCCAAACCAGTCCATATGCTCCCCAATTTCAACAACAGCAAACAGTCACATCTCAAGGTGGATTTTACCCCAATGGAAATGCCCCAAATGCAGGTTCACCTCAGCAGTATGAGCAATCATTGTATACACAAAATACAGGTCCTGCCTGGAATGGTCAGGTTGCCCAACAGCAACAGCAACAACCACCTTCACCTGTTTATGGCACACAAAGTGGATCATTGCCACCACCTCCTTGGGAAGCTCAACCAGCAGCAGATAATGGAAGTCCATTAGCGGGCGCTCAGTATCCACACATGCAGAATTCTGGACATCCTATGGGGCCTCAAACAATGGGCAATGACCAGGGTGTTGGTATGTATATGCAGCCAAATGCTAACAGCCATATGTCAGGAATGAATAACCATGTTGGGAGCAATCAAATGGGCTTGCAACCTCAGCATATGCAAGGTGTTGCAGGACCCTACATGGGCATGGCTCCACATCAAATGCAGGGTGGTCCTGTGATGTATCCTCAACAGATGTACGGAAACCAATTTATGGGATACGGCTATGATCAACGACAAGGAGTTCATTATCAGCAACAAGGAGTTCCATATATTGAACGGCAAATGTATGGTATGTCTGTTAGAGACGATAGTAGTTTGAGAAACCCTTACCAAGCTTCTACCACATCGTATGCTCCATCTGGGAAGCCTTCCAAGCCAGAGGATAAGTTATTTGGAGACCTTGTTGACATGGCAAAAGTGAAGCCAAAACCCACTCCAGGCCGAGCTGGTAGCATGTAA 2019 0.4497 MVNSMVERATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSKNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDFHVKEKILVLVDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSEQSAPVFTPPQTQPLASYPQNIRDTNVDQDAAQSSAESEFPTLNLTEIQNARGIMDVLAEMLNALDPSNKEGIRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESISSGISTKNENHTENLNPSLAPAGALVDIDAPLVDTGDTSKQTDGRSSSNVEAGSQTLNQLLLPAPPTSNGSTIPAKVDPKWDLLSGDDYNSPKADSSNALVPLGEQPTASPVSQQNALVLFDMFSNGNNAPTSVNSQPPHPANVAGQTSPYAPQFQQQQTVTSQGGFYPNGNAPNAGSPQQYEQSLYTQNTGPAWNGQVAQQQQQQPPSPVYGTQSGSLPPPPWEAQPAADNGSPLAGAQYPHMQNSGHPMGPQTMGNDQGVGMYMQPNANSHMSGMNNHVGSNQMGLQPQHMQGVAGPYMGMAPHQMQGGPVMYPQQMYGNQFMGYGYDQRQGVHYQQQGVPYIERQMYGMSVRDDSSLRNPYQASTTSYAPSGKPSKPEDKLFGDLVDMAKVKPKPTPGRAGSM* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1619 672 PANTHER TARGET OF MYB PROTEIN 1 1 666 - -
Gso17g1619 672 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Gso17g1619 672 Gene3D - 1 135 IPR008942 -
Gso17g1619 672 MobiDBLite consensus disorder prediction 299 318 - -
Gso17g1619 672 CDD VHS 2 132 - -
Gso17g1619 672 CDD GAT_GGA_like_plant 188 266 - -
Gso17g1619 672 PANTHER TOM1-LIKE PROTEIN 1 666 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gso17g1619 672 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Gso17g1619 672 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Gso17g1619 672 MobiDBLite consensus disorder prediction 350 375 - -
Gso17g1619 672 MobiDBLite consensus disorder prediction 301 318 - -
Gso17g1619 672 MobiDBLite consensus disorder prediction 356 375 - -
Gso17g1619 672 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Gso17g1619 672 Gene3D - 183 275 IPR038425 -
Gso17g1619 672 MobiDBLite consensus disorder prediction 395 479 - -
Gso17g1619 672 MobiDBLite consensus disorder prediction 480 494 - -
Gso17g1619 672 SUPERFAMILY GAT-like domain 141 268 - -
Gso17g1619 672 MobiDBLite consensus disorder prediction 622 653 - -
Gso17g1619 672 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Gso17g1619 672 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Gso17g1619 672 MobiDBLite consensus disorder prediction 624 641 - -
Gso17g1619 672 MobiDBLite consensus disorder prediction 395 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1619 Gso-Chr17 27287716 27307160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1619 - - gmx:732580 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0693 4 6771003 6778284 Gso17g1619 17 27287716 27307160 PCT
Gso6g0695 6 6407977 6414662 Gso17g1619 17 27287716 27307160 PCT