Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1287 ATGCTCTCATGGCAAAAAAAATTCGCTGCTTATTTAGAATTGGAGATGGCAGAGTTACCAGGATATTTTCGTTACTGCTTGAACACAGGGAAACTTGTCCTTTTGGGAATTTTGGTCTCTGGAGGAGTTGTTTTGCAAATTTTGGCATGTGCATTGTATAATAATTGGTGGCCAATGCTAACTGCAATAACATATGTGCTTCTTCCAATGCCTTTGCTCTTCTTGGTGGGATCTGGACGTTCTTCCTTATTTTCTGAATCAGATAGCAGCTGGGTGAATGCAACCAAGTTCTTAACCGGGGCCTCTGCTGTTGGAAGCATTGCCATTCCAGCCATATTAAAGCATTCTGGTGTTATAGGTTGGGGAGCCTTTGCAATGGAACTCTCTTCCTTCTTTGTGTTTGTATTTGCAATATTGTGTTACATTCGGATTAATGATGAAGATGATTATAGTAGTCTTTGA 462 0.4026 MLSWQKKFAAYLELEMAELPGYFRYCLNTGKLVLLGILVSGGVVLQILACALYNNWWPMLTAITYVLLPMPLLFLVGSGRSSLFSESDSSWVNATKFLTGASAVGSIAIPAILKHSGVIGWGAFAMELSSFFVFVFAILCYIRINDEDDYSSL* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1287 153 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG 16 150 - -
Gso17g1287 153 Pfam Vacuolar protein sorting 55 32 148 IPR007262 -
Gso17g1287 153 PANTHER LEPTIN RECEPTOR-RELATED 16 150 IPR007262 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1287 Gso-Chr17 12697998 12700195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1287 16 149 EF-hand Containing Proteins AT1G32410 69.403 1.01e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1287 - - gmx:100775400 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1723 1 54004761 54007277 Gso17g1287 17 12697998 12700195 PCT
Gso11g0355 11 3027526 3029976 Gso17g1287 17 12697998 12700195 PCT
Gso17g1287 17 12697998 12700195 Gso1g1723 1 54004761 54007277 PCT
Gso17g1287 17 12697998 12700195 Gso11g0355 11 3027526 3029976 PCT