Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0879 ATGCCCTCAAACACATTTTCCACACCGATCTTCTTCCCTCTGTCCTCGGATCTGATGCAAAACCGTCCTAAAATGGAGTCTTTTCATCGATTTAGATTGTGGGTTTTCGTTTTTCTGTGCTTAATGTTCCAATCGGGAAATGGGTTTTACCTCCCCGGTAGTTACCCTCACAAGTACGGCATTGGGGATGAGTTATCGGTGAAGGTGAATTCTCTGACTTCAATTGAGACAGAAATGCCCTTCAGTTATTATAGTTTACCCTTCTGCAAGCCTGAGGGTGGTGTCAAGGACAGTGCTGAGAATCTCGGTGAACTCCTCATGGGGGATCGGATCGAGAACTCGCCTTACAAGTTTAAGATGTACACCAATGAGTCTGAGATATTCCTGTGTCAAGTGGAAAAGCTCTCTGATGATGAGTTCAAGATCTTGAAGAAGAGGATTGATGAGATGTATCAGGTTAATCTCATACTTGATAATTTGCCTGCCATTAGATTTACCAAGAAGGAGGAGTACTTTCTGAGGTGGACCGGGTACCCGGTTGGTATCAAGATTCAGGATGTGTATTATATGTTTAACCATCTGAGGTTTAATGTCCTTGTCCATAAGTATGAGGAGACCAATGTGGCACGTGTTATGGGGACTGGTGATGCGACCGAGATGATCCCAACAATTGGTAAGGAGGGATCTGACAAGCCTGGTTACATGGTTGTTGGGTTTGAGGTGATACCTTGTAGTATTATGCATAATGCTGATTCTGTTAAAGGGTTGAAAATGTATAACAAATACCCGTCGCCGATCAGATGCGATCCATCCACGGTGGCGATGCCTATCAAGGAAGGGCAGCCACTTACATTTACTTATGAGATCACCTTTGAGGAGAGTGATATCAAGTGGCCATCTAGATGGGATGCCTACTTGAAGATGGAGGGAGCCAAAGTTCATTGGTTCTCTATCCTCAATTCGCTTATGGTGATCACTTTTCTTGCTGGCATTGTTCTTGTTATCTTCCTGAGGACTGTTAGGAGGGATCTGACCCGGTACGAGGAGCTTGATAAGGAGGCCCAAGCGCAGATGAATGAGGAGTTATCTGGTTGGAAGCTTGTTGTGGGGGATGTTTTCCGTGCCCCATCAAATCCTGCCTTGTTGTGTATAATGGTTGGTGATGGAGTTCAAATTCTGGGGATGGCTGTTGTGACAATTTTGTTTGCTGCACTTGGATTCATGTCACCGGCCTCACGGGGAACACTTATCATAGGTATGCTGTTTTTCTACATGATACTTGGTGTTGCTGCTGGTTATGTTGCAGTTCGGCTATGGAGGACAATCGGCTGCGGTGATCAGAAGGGATGGATTTCCGTTGCATGGAAGGCTGCTTGTTTCTTCCCTGGTATCGCCTTTTTGATCCTCACAACCTTGAACTTCCTATTGTGGGGAAGTCACAGCACAGGAGCCATTCCATTTTCACTCTTTGTTATACTGATTTTGCTTTGGTTTTGCATCTCTGTGCCCCTTACCCTTATCGGTGGGCTCTTTGGAGCAAGGGCACCTCACGTTGAGTATCCAGTCCGGACGAATCAAATCCCTCGAGAAATTCCCCAGCAGAGGTACCCATCATGGCTTTTGGTTCTCGGTGCTGGCACCCTCCCATTCGGTACCTTGTTCATCGAGCTCTTCTTTATTATGTCTAGTATTTGGATGGGCCGTGTTTACTATGTATTTGGATTTCTCTTAGTTGTTATGATTCTTCTTGTGGTGGTCTGTGCTGAGGTATCTCTAGTTCTAACCTACATGCACCTCTGTGTGGAGGACTGGAGATGGTGGTGGAAATCATTCTTTGCCTCTGGTTCTGTTGCCATATACATCTTTTTGTACTCCATAAACTATCTTGTATTTGATCTCAAGAATCTGAGTGGGCCAGTTTCTGCAACTCTCTACTTGGGGTATTCCCTCTTCATGGTTCTAGCAATCATGTTGGCTACAGGCACAGTTGGGTTCCTTTCCTCATTCTGGTTCGTGTATTACTTGTTTTCTTCGGTCAAATTGGATTGA 2049 0.4514 MPSNTFSTPIFFPLSSDLMQNRPKMESFHRFRLWVFVFLCLMFQSGNGFYLPGSYPHKYGIGDELSVKVNSLTSIETEMPFSYYSLPFCKPEGGVKDSAENLGELLMGDRIENSPYKFKMYTNESEIFLCQVEKLSDDEFKILKKRIDEMYQVNLILDNLPAIRFTKKEEYFLRWTGYPVGIKIQDVYYMFNHLRFNVLVHKYEETNVARVMGTGDATEMIPTIGKEGSDKPGYMVVGFEVIPCSIMHNADSVKGLKMYNKYPSPIRCDPSTVAMPIKEGQPLTFTYEITFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPALLCIMVGDGVQILGMAVVTILFAALGFMSPASRGTLIIGMLFFYMILGVAAGYVAVRLWRTIGCGDQKGWISVAWKAACFFPGIAFLILTTLNFLLWGSHSTGAIPFSLFVILILLWFCISVPLTLIGGLFGARAPHVEYPVRTNQIPREIPQQRYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLVVMILLVVVCAEVSLVLTYMHLCVEDWRWWWKSFFASGSVAIYIFLYSINYLVFDLKNLSGPVSATLYLGYSLFMVLAIMLATGTVGFLSSFWFVYYLFSSVKLD* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0879 682 Pfam Endomembrane protein 70 80 634 IPR004240 GO:0016021
Gso17g0879 682 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 26 682 IPR004240 GO:0016021
Gso17g0879 682 Coils Coil 337 357 - -
Gso17g0879 682 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 26 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0879 Gso-Chr17 8232513 8235158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0879 25 682 Miscellaneous Gene Families AT5G35160 85.281 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0879 K17086 - gmx:100780910 1367.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0879 17 8232513 8235158 Gso17g0879 17 8232513 8235158 ECH
Gso17g0879 17 8232513 8235158 Gso15g1684 15 26515805 26518721 PCT
Gso17g0879 17 8232513 8235158 Gso9g0802 9 14478689 14481463 PCT
Gso15g1684 15 26515805 26518721 Gso17g0879 17 8232513 8235158 PCT
Gso9g0802 9 14478689 14481463 Gso17g0879 17 8232513 8235158 PCT