Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0414 ATGATTCTCATTATCTCCCTCATTTTTTCTCTTCTCTCTTTCTCCCATGCTTCTGTCCTAGATTTCTGTGTTGCAGATTATGCAGGTCCTATTGGACCTGCAGGATATTCCTGCAAGAAGCCTTCAAAGGTCACAGCAGATGATTTTGCTTACAGTGGCCTTGGCATTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTCTCAACGGTCTTGGCATTTCCGCAGCACGTTTGGACTTAGCAGCAGGTGGAGTTATACCACTTCACACTCATCCTGGAGCTTCAGAATTACTTGTTGTAATTGAAGGGAGCATCCTAGCTGGATTCATTTCTTCTGCCAACATTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGCATTCCCTCAAGGCTTGCTTCATTTCCAAATCAATGCAGGCAAATCTTCAGCCCTGGCAATTGTAAGCTTCAGTAGCTCCAATCCTGGTCTACAAATTCTGGACTTCGCTTTGTTCAAAAGTAGTTTCCCCACACCATTGATAGTACAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTACTTGGAGGCTCAGGCTAA 627 0.4466 MILIISLIFSLLSFSHASVLDFCVADYAGPIGPAGYSCKKPSKVTADDFAYSGLGIAGNTSNIIKAAVTPAFDAQFAGLNGLGISAARLDLAAGGVIPLHTHPGASELLVVIEGSILAGFISSANIVYLKTLKKGDVMAFPQGLLHFQINAGKSSALAIVSFSSSNPGLQILDFALFKSSFPTPLIVQTTFLDAALVKKLKGVLGGSG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0414 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Gso17g0414 208 Pfam Cupin 55 189 IPR006045 -
Gso17g0414 208 CDD cupin_OxOx 15 204 - -
Gso17g0414 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 204 - -
Gso17g0414 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Gso17g0414 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Gso17g0414 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Gso17g0414 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Gso17g0414 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Gso17g0414 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 204 - -
Gso17g0414 208 SMART Cupin_1_3 52 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0414 Gso-Chr17 3781483 3782518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0414 1 207 Miscellaneous Gene Families AT5G20630 70.192 5.32e-99 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0414 - - gmx:100800387 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0414 17 3781483 3782518 Gso17g0414 17 3781483 3782518 ECH
Gso17g0414 17 3781483 3782518 Gso15g1464 15 16863420 16864486 PCT
Gso15g1464 15 16863420 16864486 Gso17g0414 17 3781483 3782518 PCT