Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1464 ATGAAGAAGATGATTCTAACCCTCTTCTTCAATATCATTTTATCTCTCCTCTCCCTCTCCCACGCCTCCGTGGTGGATTTCTGCGTAGCAGACTACACAGGCCCCAATGGCCCCGCAGGGTACTCATGCAAGAGCCCAGCAAAGGTCACGGTGGACGACTTCGTCTACTCCGGCCTTGGCACCGCCGGCAACACCTCAAACATCATCAAAGCCGCGGTGACGCCGGCGTTCGACGCGCAATTCCCCGGCGTCAACGGGCTTGGAATCTCCATTGCACGCCTAGACCTAGCAGCCGGTGGAGTCATCCCTCTTCACACGCACCCTGGTGCCTCAGAGCTGCTGGTGGTTGTGCAGGGAACAATCTGCACCGGCTTCGTTGCTTCGGACAACACTGTGTACCTCAAAACCCTAAAAAAGGGTGATGTCATGGTGTACCCTCAGGGCTTGTTGCACTTCCAGATCAACGATGGAGAGTCTCAGGCTTTGGCTTTTGTGAGCTTCAGCAGTGCTAACCCTGGCCTCCAGATTCTGGACTTTTCTTTGTTCAAGAGTGATTTCCCCACTGAGCTTATCACGCAAACCACTTTCATTGATGCTGCAGTTGTCAAGAAGCTCAAGGGTGTTCTTGGAGGGTCAGGTTAA 642 0.5358 MKKMILTLFFNIILSLLSLSHASVVDFCVADYTGPNGPAGYSCKSPAKVTVDDFVYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISIARLDLAAGGVIPLHTHPGASELLVVVQGTICTGFVASDNTVYLKTLKKGDVMVYPQGLLHFQINDGESQALAFVSFSSANPGLQILDFSLFKSDFPTELITQTTFIDAAVVKKLKGVLGGSG* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1464 213 CDD cupin_OxOx 21 209 - -
Gso15g1464 213 SUPERFAMILY RmlC-like cupins 24 207 IPR011051 -
Gso15g1464 213 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Gso15g1464 213 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Gso15g1464 213 PRINTS Germin signature 168 183 IPR001929 GO:0030145
Gso15g1464 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 209 - -
Gso15g1464 213 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
Gso15g1464 213 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 12 209 - -
Gso15g1464 213 Gene3D Jelly Rolls 21 212 IPR014710 -
Gso15g1464 213 SMART Cupin_1_3 57 203 IPR006045 -
Gso15g1464 213 Pfam Cupin 58 201 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1464 Gso-Chr15 16863420 16864486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1464 3 212 Miscellaneous Gene Families AT5G20630 68.246 9.61e-103 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1464 - - gmx:100806553 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0414 17 3781483 3782518 Gso15g1464 15 16863420 16864486 PCT
Gso15g1464 15 16863420 16864486 Gso17g0414 17 3781483 3782518 PCT