Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0405 ATGGCACGCTTGTCACTGCTCATTTTCGCGTTCTGCGCCGTCGCCGTCGCCGTCGCGGGCTCCTCCTTCGATGATGCCAACCCTATCCGTTTAGCGTCGGACTTGGAGTCGCAGGTGCTGGACGTGATCGGACAGAGCCGCCACGCTCTCTCCTTCGCCCGCTTCGCTCGCCGCCACGGCAAGCGCTACCGTTCCGTCGACGAGATCCGCAACCGCTTCCGGATCTTCTCTGATAATCTTAAACTCATCAGATCCACCAACAGGAGGTCTCTCACCTACACGCTCGGCGTCAATCATTTTGCTGACTGGACTTGGGAGGAGTTCACCAGACACAAGCTCGGCGCTCCTCAGAATTGCTCTGCCACGCTCAAAGGCAACCACAGGCTCACCGATGCTGTTCTTCCTGACGAGAAAGACTGGAGAAAAGAAGGTATAGTCAGCCAAGTTAAAGATCAAGGCAACTGCGGATCTTGCTGGACATTCAGCACAACTGGTGCATTGGAGGCAGCTTACGCACAGGCCTTTGGGAAGAATATCAGTCTTTCTGAGCAGCAGCTAGTGGACTGTGCCGGTGCTTTCAATAACTTTGGCTGTAATGGTGGTTTGCCATCCCAAGCCTTTGAATACATTAAATACAATGGTGGCCTCGACACAGAAGAAGCATATCCCTACACCGGAAAAGATGGTGTCTGCAAATTTACAGCTAAAAACGTTGCTGTTCGAGTCATTGACTCTATCAATATCACTTTGGGTGCTGAGGATGAATTGAAACAAGCGGTTGCTTTTGTTCGGCCAGTTAGTGTGGCATTTGAGGTAGCGAAGGACTTCCGATTCTACAATAATGGAGTTTACACTAGTACCATTTGTGGTAGCACGCCCATGGATGTAAATCATGCTGTTCTTGCTGTTGGGTATGGAGTTGAAGATGGTGTTCCATATTGGATCATTAAAAATTCATGGGGAAGCAACTGGGGTGACAATGGTTACTTCAAGATGGAATTAGGGAAGAATATGTGCGGTGTTGCAACTTGTGCATCTTATCCTGTTGTGGCTTAA 1056 0.4972 MARLSLLIFAFCAVAVAVAGSSFDDANPIRLASDLESQVLDVIGQSRHALSFARFARRHGKRYRSVDEIRNRFRIFSDNLKLIRSTNRRSLTYTLGVNHFADWTWEEFTRHKLGAPQNCSATLKGNHRLTDAVLPDEKDWRKEGIVSQVKDQGNCGSCWTFSTTGALEAAYAQAFGKNISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKYNGGLDTEEAYPYTGKDGVCKFTAKNVAVRVIDSINITLGAEDELKQAVAFVRPVSVAFEVAKDFRFYNNGVYTSTICGSTPMDVNHAVLAVGYGVEDGVPYWIIKNSWGSNWGDNGYFKMELGKNMCGVATCASYPVVA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0405 351 PANTHER THIOL PROTEASE ALEURAIN 28 348 - -
Gso17g0405 351 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Gso17g0405 351 SMART pept_c1 134 349 IPR000668 GO:0006508|GO:0008234
Gso17g0405 351 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 152 163 IPR000169 -
Gso17g0405 351 SUPERFAMILY Cysteine proteinases 47 349 IPR038765 -
Gso17g0405 351 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 348 - -
Gso17g0405 351 PRINTS Papain cysteine protease (C1) family signature 152 167 IPR000668 GO:0006508|GO:0008234
Gso17g0405 351 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Gso17g0405 351 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Gso17g0405 351 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Gso17g0405 351 Pfam Papain family cysteine protease 134 349 IPR000668 GO:0006508|GO:0008234
Gso17g0405 351 Gene3D Cysteine proteinases 43 350 - -
Gso17g0405 351 SMART Inhibitor_I29_2 52 108 IPR013201 -
Gso17g0405 351 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Gso17g0405 351 CDD Peptidase_C1A 135 348 IPR039417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0405 Gso-Chr17 3730337 3733066 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0405 K01366 - gmx:100787165 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0405 17 3730337 3733066 Gso17g0405 17 3730337 3733066 ECH
Gso17g0405 17 3730337 3733066 Gso15g1471 15 16955921 16961058 PCT
Gso17g0405 17 3730337 3733066 Gso9g0587 9 6975923 6980629 PCT
Gso15g1471 15 16955921 16961058 Gso17g0405 17 3730337 3733066 PCT
Gso9g0587 9 6975923 6980629 Gso17g0405 17 3730337 3733066 PCT