Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0273 ATGGCCACTGGACAACTCTTCTCCCGTACTACACAAGCTTTGTTTTACAACTACAAGCAACTTCCTGTCCAGCGGATGCTTGACTTTGACTTTCTTTGTGGTAGAGAAACACCGTCAGTTGCTGGAATAATTAATCCTGGTTCTGAGGGATTTCAAAAGCTCTTTTTTGGTCAGGTGGAAATTGCCATTCCAGTTCATGCTGGTATTGAAGCAGCTTGTGCAGCACACCCCACTGCTGATGTGTTCATCAATTTTGCGTCATTTAGAAGTGCGTCTGCATCATCCATGGCTGCTTTGAAGCAGACAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCGGAGTCAGACACTAAGCAACTTATAGCGTATGCTCGAGCAAACAGTAAGGTTGTTATTGGGCCAGCCACTGTTGGAGGAATTCAAGCTGGTGCTTTTAAGATAGGTGACACAGCTGGGACAATTGATAACATAATTCATTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTATACAACACTATTGCCCGTGTAACTGATGGAATTTATGAAGGCATTGCCATTGGTGGAGATGTTTTCCCAGGTTCCACACTTTCTGACCATGTTTTGCGGTTTAACAACATACCACAGGTGAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCTCTAGTGGAAGCCCTAAAACAAGGGAAAGTGACTAAACCAGTTGTTGCTTGGGTTAGCGGAACCTGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCTGGAGCTAAAAGTGGTGGTGAGATGGAGTCTGCTCAAGCAAAGAATCAGGCACTAAAAGAAGCTGGAGCTGTTGTTCCCACTTCATTTGAAGCTTTTGAAGACGCAATAAAGGAAACATTTGACAAATTGGTTCAAGAAGGGAACATCACACCTTTTAAAGAGTTTACTGCACCGCCAATCCCTGAGGACCTTAACACAGCAATTAGGAGTGGAAAAGTACGTGCTCCAACTCACATTATTTCCACCATCTCTGATGACAGAGGTGAGGAGCCATGCTATGCTGGTGTACCAATGTCTACCATTATTGAAAATGGTTATGGTGTGGGTGATGTAATCTCTCTTTTGTGGTTCAAACGCAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGTATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGGAAGGACCTTGTCTCCTGTCTTGTTTCAGGTTTGCTTACAATTGGTCCTCGATTTGGGGGTGCCATTGATGATGCTGCTCGCTATTTCAAGGATGCCTATGACAGGAGTCTTACACCTTATGAATTTGTTGAAAGTATGAAGAAGAAGGGCATCCGTGTTCCAGGAATAGGGCACAGAATCAAGAATAGGGATAACAAAGATAAGAGAGTCGAGCTGCTACAGAAATTTGCACGCACGCATTTTCCTTCTGTGAAATACATGGAGTATGCTGTTGAAGTTGAAAACTACACCCTCACCAAGGCAAATAACCTAGTTCTAAACGTAGATGGTGCAATCGGGTCACTTTTCTTGGATCTTCTTGCTGGTAGCGGAATGTTCACCAAACAAGAGGTTGATGAAATTGTGGAGATTGGCTATCTGAATGGGCTTTTTGTTTTGGCACGCTCCATTGGTCTGATTGGGCATACCTTTGACCAGAAGAGGTTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTCTTTACACAAAGTGA 1827 0.4373 MATGQLFSRTTQALFYNYKQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQVEIAIPVHAGIEAACAAHPTADVFINFASFRSASASSMAALKQTTIRVVAIIAEGVPESDTKQLIAYARANSKVVIGPATVGGIQAGAFKIGDTAGTIDNIIHCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQVKMMVVLGELGGRDEYSLVEALKQGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALKEAGAVVPTSFEAFEDAIKETFDKLVQEGNITPFKEFTAPPIPEDLNTAIRSGKVRAPTHIISTISDDRGEEPCYAGVPMSTIIENGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNSIVTARAGKDLVSCLVSGLLTIGPRFGGAIDDAARYFKDAYDRSLTPYEFVESMKKKGIRVPGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVEVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEVDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0273 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Gso17g0273 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Gso17g0273 608 Gene3D - 2 137 - -
Gso17g0273 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Gso17g0273 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
Gso17g0273 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Gso17g0273 608 PRINTS Succinyl-CoA synthase signature 96 113 - -
Gso17g0273 608 PRINTS Succinyl-CoA synthase signature 199 217 - -
Gso17g0273 608 PRINTS Succinyl-CoA synthase signature 230 243 - -
Gso17g0273 608 PRINTS Succinyl-CoA synthase signature 266 283 - -
Gso17g0273 608 Gene3D - 451 552 IPR016143 -
Gso17g0273 608 CDD CCL_ACL-C 369 606 - -
Gso17g0273 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Gso17g0273 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Gso17g0273 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
Gso17g0273 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
Gso17g0273 608 Gene3D Citrate Synthase, domain 1 400 598 IPR016142 -
Gso17g0273 608 Gene3D - 138 323 IPR016102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0273 Gso-Chr17 2459622 2465245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0273 1 608 Acyl Lipid Metabolism Gene Families AT5G49460 92.270 0.0 1127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0273 K01648 - gmx:100780205 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0273 17 2459622 2465245 Gso17g0273 17 2459622 2465245 ECH
Gso7g2024 7 44262267 44267937 Gso17g0273 17 2459622 2465245 GST
Gso17g0273 17 2459622 2465245 Gso15g1174 15 11549025 11555551 PCT
Gso17g0273 17 2459622 2465245 Gso9g0305 9 2917252 2923380 PCT
Gso15g1174 15 11549025 11555551 Gso17g0273 17 2459622 2465245 PCT
Gso9g0305 9 2917252 2923380 Gso17g0273 17 2459622 2465245 PCT