Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1174 ATGGCCACCGGACAACTATTCTCCCGCACTACACAGGCTTTGTTTTACAACTATAAGCAACTTCCCATACAGCGGATGCTTGATTTTGACTTCCTTTGCGGCAGGGAAACACCATCAGTTGCTGGAATAATTAACCCTGGTTCTGAGGGATTTCAAAAACTTTTTTTTGGTCAGGAGGAAATTGCCATCCCAGTTCATGCCACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAACTTTGCTTCATTTAGAAGTGCTGCAGCATCATCCATGGCAGCTTTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGAGTACCCGAGTCAGACACTAAGCAATTGATTGCATATGCCCGATCAAACAATAAGGTTGTTATTGGTCCAGCCACTGTTGGAGGCATTCAAGCAGGTGCTTTTAAAATTGGTGACACAGCTGGAACAATTGACAATATAATTCAGTGCAAGCTCTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAACTCTACAACACTATTGCCCGTGTAACTGATGGGATTTATGAAGGCATTGCTATTGGAGGAGATGTTTTCCCTGGTTCCACACTTTCTGACCATGTTTTACGGTTTAACAACATGCCACAGGTTAAAATGATGGTAGTACTTGGGGAACTTGGTGGGCGTGATGAGTATTCCTTAGTGGAGGCCTTAAAACAAGGAAAGGTATCCAAACCGGTTGTTGCCTGGGTCAGTGGCACATGTGCACGACTCTTCAAATCTGAAGTACAATTTGGTCATGCAGGAGCCAAAAGTGGTGGTGAGTTAGAGTCTGCTCAAGCAAAGAATCAGGCACTAAGGGACGCTGGAGCTGTTGTTCCCACATCATATGAAGCTTTTGAAGCTGCAATTAGGGAAACATTTGATAAATTGGTTGAAGAAGGGAAGATCACACCAATCAAGGAAATCACACCTCCACCAATCCCTGAAGACCTTAGTACTGCAATTAAGAGTGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATTTCTGATGACAGAGGAGAGGAGCCATGCTATGCTGGTGTACCCATGTCTTCCATTATCGAAAAAGGTTATGGTGTTGGTGATGTTATCTCTCTTTTGTGGTTTAAACGAAGCCTTCCCCGTTACTGTACTCAATTTATTGAGATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCAGGGAAAGACCTAGTTTCCAGTCTCGTATCAGGTTTGCTAACAATTGGTCCTCGATTTGGGGGTGCCATCGATGATGCTGCTCGCTACTTCAAGGATGCTCATGACAGGGCACTTACTCCTTATGAGTTTGTTGAAGGTATGAAAAAGAAGGGAATTCGTGTGGCAGGAATAGGGCACAGGATCAAGAATAGGGACAACAAAGATAAGAGAGTTGAGCTGCTACAGAAGTTTGCACGAACACATTTTCCTTCCGTGAAATACATGGAATATGCTGTTCAAGTTGAGACCTACACACTCACAAAGGCAAATAATTTAGTTCTTAACGTAGATGGTGCAATTGGATCTCTTTTCTTGGATCTTCTTGCTGGTAGTGGAATGTTCACCAAACAAGAGATTGATGAAATTGTGGAGATTGGCTATCTGAATGGCCTCTTTGTGCTGGCACGCTCCATTGGTCTGATTGGACACACCTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGA 1827 0.439 MATGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHATIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKQLIAYARSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNMPQVKMMVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGELESAQAKNQALRDAGAVVPTSYEAFEAAIRETFDKLVEEGKITPIKEITPPPIPEDLSTAIKSGKVRAPTHIISTISDDRGEEPCYAGVPMSSIIEKGYGVGDVISLLWFKRSLPRYCTQFIEICIMLCADHGPCVSGAHNTIVTARAGKDLVSSLVSGLLTIGPRFGGAIDDAARYFKDAHDRALTPYEFVEGMKKKGIRVAGIGHRIKNRDNKDKRVELLQKFARTHFPSVKYMEYAVQVETYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTKQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDVLYTK* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1174 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 174 203 IPR033847 -
Gso15g1174 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 259 275 IPR017440 -
Gso15g1174 608 Gene3D - 2 137 - -
Gso15g1174 608 PANTHER ATP-CITRATE SYNTHASE 1 608 - -
Gso15g1174 608 Pfam CoA-ligase 173 298 IPR005811 GO:0003824
Gso15g1174 608 PANTHER ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 2-LIKE 1 608 - -
Gso15g1174 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 136 IPR036291 -
Gso15g1174 608 SUPERFAMILY Citrate synthase 130 604 IPR036969 GO:0046912
Gso15g1174 608 CDD CCL_ACL-C 369 606 - -
Gso15g1174 608 Gene3D - 450 547 IPR016143 -
Gso15g1174 608 Gene3D - 138 323 IPR016102 -
Gso15g1174 608 Pfam Citrate synthase, C-terminal domain 399 598 IPR002020 GO:0046912
Gso15g1174 608 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 168 193 IPR017866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1174 Gso-Chr15 11549025 11555551 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1174 1 608 Acyl Lipid Metabolism Gene Families AT3G06650 93.914 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1174 K01648 - gmx:100795745 1184.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1174 15 11549025 11555551 Gso9g0305 9 2917252 2923380 GST
Gso7g2024 7 44262267 44267937 Gso15g1174 15 11549025 11555551 PCT
Gso17g0273 17 2459622 2465245 Gso15g1174 15 11549025 11555551 PCT
Gso15g1174 15 11549025 11555551 Gso7g2024 7 44262267 44267937 PCT
Gso15g1174 15 11549025 11555551 Gso17g0273 17 2459622 2465245 PCT