Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0271 ATGAACGCCCTCCCTTCATCTTCCTCTTCCACCTTCACTTTCTTAACTCAGTCCAAGAACCCCAATCATCTCTTCAAGTTGACACATAAAGTACCCATTTTACCCCTACACTCACCTTCTCCATGTTGCTCCCTCAGTGACTCGTCCTCCTCGTCGACCACGGTGCTGGACAAAAATGCCCTTTCACCCGAACAGAATTCCCGCATTGCAGTTTCGCCGGATGACTCGAGCTTCGAGGAAGCCCTCGTGATTCGCCGGCCGGTGACGGATTTTTCCGCCGAATACTCCGGCGAGGAGGAGGAAGAAGAGAAGGAGACAGAGGAGAAAGAAGAAGAAGATGACCCGAAGGCTTCGGCGATCGACGAGGGGCTCGCGAGATTTGCGAAGAAGATGCCGATGTTTGAGCCAGAGAGGGTCGAATCCAAAGAGAGGCCACTCGCAATTAATTTGGACTTGGCGTTATACAGGGCGAAGCTTTTGGCTCGCAGAACCTTTCAGTATGAAAAGGCAGAGTCATTACTTCGTAAGTGTATAAGCCTTTGGCCTGAAGATGGTCGACCTTACGTGGTACTTGGAAAGATATTGAGCAAGCAATCAAAAACAAGTGAAGCCAGAGAGATATACGAGAAGGGTTGCCAGGCTACGCAGGGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTAGAAATGCAAATGGGAAATATCAGGAGAGCAAGAGAGTTGTTTGATGCTGCCACAGTTGCTGACAAGAGGCATGTTGCTGCTTGGCATGGATGGGCAAATCTAGAATTAAAGCAGGGAAATCTAAAGAAGGCAAGGATTCTACTTGGTAAAGGTCTTCAATATTGTGGACAGAATGAGTACATATACCAAACACTTGCACGGCTTGAAGCTAGAGCAAATAGATATCTGCAGGCTCGATATTTATTCAATCAGGCCACTAAGTGTAATCCTAATAGTTGTGCTAGTTGGCTTAGTTGGGCGCAAATGGAGGTGGAGCAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTATGCTTGGCATGTATGGGGCGTTTTTGAAGCTAACATGGGCAACATTGACATGGGAAGAAAACTTTTAAAGATAGGTCATAATCTAAACCCAAGGGATGCTGTTCTACTTCAATCTCTTGCTTTATTAGAATACCAATACTCAACTGCAAACGTTGCCCGGGTTTTGTTCAGGAGAGCATCTGAATTGAATCCAAGGCACCAGCCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAACGAAACTTGAATAAAGCCAGACAATTATACCAAAAAACTTTATCAATTGATCAAAACAGTGAAACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTCTGGAGCATAGGGTTGGCAATCTTTCAGCTGCTCGTCGATTATTTAAATCATCGTTGAATATAAATTCTCAGAGTTACGTGACATGGATGACTTGGGCATCAGTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAATCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCCTAGGTATTTTAGACCCGGCTATTGACAGTTTAAAGAGAATCCTCAAGCTGAACCCAAATTCGTACAACATGCCACTGGATTCTTTGAGGAACATTGCGGGAACAAATAAAAACAGAGTTGATTCTTCTAGTGAAGACGAGGATGATGATGATGCAAATGGAAAAAGTGACTTTGATTTGGATGCTTTCATTAAGCAAAAGCTAACATTAGATTTGTCCAATCTAGAAATTCAGTTGGAAGAACCAAAATTTTATTCTGTGAAGAGAAGTACGTCTCCTAGAAGGATATGGCGACGATCAATTAATGAAATTGCTGAAGTGCAAGTCACACAGTAA 1950 0.4415 MNALPSSSSSTFTFLTQSKNPNHLFKLTHKVPILPLHSPSPCCSLSDSSSSSTTVLDKNALSPEQNSRIAVSPDDSSFEEALVIRRPVTDFSAEYSGEEEEEEKETEEKEEEDDPKASAIDEGLARFAKKMPMFEPERVESKERPLAINLDLALYRAKLLARRTFQYEKAESLLRKCISLWPEDGRPYVVLGKILSKQSKTSEAREIYEKGCQATQGENAYIWQCWAVLEMQMGNIRRARELFDAATVADKRHVAAWHGWANLELKQGNLKKARILLGKGLQYCGQNEYIYQTLARLEARANRYLQARYLFNQATKCNPNSCASWLSWAQMEVEQENYRAARKLFEKAVQASPKNRYAWHVWGVFEANMGNIDMGRKLLKIGHNLNPRDAVLLQSLALLEYQYSTANVARVLFRRASELNPRHQPVWFAWGWMEWKERNLNKARQLYQKTLSIDQNSETAARCLQAWGVLEHRVGNLSAARRLFKSSLNINSQSYVTWMTWASVEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLGILDPAIDSLKRILKLNPNSYNMPLDSLRNIAGTNKNRVDSSSEDEDDDDANGKSDFDLDAFIKQKLTLDLSNLEIQLEEPKFYSVKRSTSPRRIWRRSINEIAEVQVTQ* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0271 649 SUPERFAMILY HCP-like 334 559 - -
Gso17g0271 649 Pfam Tetratricopeptide repeat 229 279 - -
Gso17g0271 649 Pfam Tetratricopeptide repeat 294 355 - -
Gso17g0271 649 MobiDBLite consensus disorder prediction 93 117 - -
Gso17g0271 649 Coils Coil 92 112 - -
Gso17g0271 649 MobiDBLite consensus disorder prediction 41 73 - -
Gso17g0271 649 Gene3D Tetratricopeptide repeat domain 78 401 IPR011990 GO:0005515
Gso17g0271 649 SMART tpr_5 220 253 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 254 287 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 461 494 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 288 321 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 424 457 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 185 218 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 151 184 IPR019734 GO:0005515
Gso17g0271 649 SMART tpr_5 322 355 IPR019734 GO:0005515
Gso17g0271 649 MobiDBLite consensus disorder prediction 94 110 - -
Gso17g0271 649 SMART hat_new_1 404 436 IPR003107 GO:0006396
Gso17g0271 649 SMART hat_new_1 475 507 IPR003107 GO:0006396
Gso17g0271 649 SMART hat_new_1 199 232 IPR003107 GO:0006396
Gso17g0271 649 SMART hat_new_1 336 368 IPR003107 GO:0006396
Gso17g0271 649 SMART hat_new_1 302 334 IPR003107 GO:0006396
Gso17g0271 649 SMART hat_new_1 268 300 IPR003107 GO:0006396
Gso17g0271 649 SMART hat_new_1 234 266 IPR003107 GO:0006396
Gso17g0271 649 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 7 639 IPR044624 GO:0003729|GO:0006397
Gso17g0271 649 Gene3D Tetratricopeptide repeat domain 405 579 IPR011990 GO:0005515
Gso17g0271 649 SUPERFAMILY TPR-like 116 400 IPR011990 GO:0005515
Gso17g0271 649 MobiDBLite consensus disorder prediction 573 593 - -
Gso17g0271 649 ProSiteProfiles TPR repeat profile. 322 355 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0271 Gso-Chr17 2450013 2455040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0271 - - gmx:100819232 1222.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0271 17 2450013 2455040 Gso17g0271 17 2450013 2455040 ECH
Gso7g2027 7 44276076 44281701 Gso17g0271 17 2450013 2455040 GST