Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0237 ATGCTAGTGGCATTGCTCTTGCTGCTGGCGTTGAGCAATGAAGTTCGAGTTAATGGTGATAGCGATGGTAGACAATGTGAGGTTAATCCAGCACTAAAGCCAAGACCACACACTGTCTCCATCTTGGAGTTTGGTGCGGTTGGGGATGGTAAAACATTGAACACTATTGCATTCCAGAATGCCATTTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCCGGAACATGGTTGACTCAAAGTTTCAATCTTACTAGCCATCTCACACTTTTCTTGGAAAAAGGTGCTGTAATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCATTACCTTCTTATGGCAGAGGAGTTGAAGTTCCCGGGGGAAGATATCAGAGTTTAGTTAATGGATACATGTTACATGATGTGGTGATAACAGGTAATAATGGAATCATTGATGGCATGGGATTGGGTTGGTGGGAATTGTTTAGTTCCCATTCCCTGAACTACAGCCGTCCACATCTGATTGAATTAGTGGCATCTAATCGCGTGGTAGTTTCAAATCTTACATTCTTGAACGCTCCTGCATATAGTATTCACCCAGTTTATTGCAGCAATGTACATATTCACAATGTTTCAATTTCTGCTCCTCAAGAATCTCCTTATACCATTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATTGCAACGGGATATGATGCAATTTCACTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTACATCTGCAGGCTTATTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCAAAGAGTGGCATTGAGTTCAGAACCATGAGGGGCAGAGGTGGTTATATGAAGGAAATCATCATATCAGACATAGAAATGGAGAATATATACACCGCTATGGCCGCCACAGGTTATTGTGGGTCTCATCCTGATGATAAATTTGACCCTAATGCTCTACCACTTTTGGACCACATTATTTTGCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGTCTTCAAGAATCTCCCTTCACTAACATATGCCTTTCCAACGTAACTTTGTCTATAAATTCTGTTTCTTCCATTCCTTGGGAATGCTCAAATGTCTCCGGATTTTCAGATTCTGTTCTTCCCAAACCATGTCCTGACCTTGAGACCCTTTCAGATTGTCTCTCCCTGCTCAGTATCAAGGGAAAAACCGCTGTCATGTGA 1350 0.4207 MLVALLLLLALSNEVRVNGDSDGRQCEVNPALKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLVNGYMLHDVVITGNNGIIDGMGLGWWELFSSHSLNYSRPHLIELVASNRVVVSNLTFLNAPAYSIHPVYCSNVHIHNVSISAPQESPYTIGIVPDSSDHVCIEDCVIATGYDAISLKSGWDEYGIAYGRPTENVHIRRVHLQAYSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEFRTMRGRGGYMKEIIISDIEMENIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQDMIGTNITIAGSFAGLQESPFTNICLSNVTLSINSVSSIPWECSNVSGFSDSVLPKPCPDLETLSDCLSLLSIKGKTAVM* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0237 449 PANTHER PECTIN LYASE-RELATED 2 438 - -
Gso17g0237 449 Pfam Glycosyl hydrolases family 28 137 416 IPR000743 GO:0004650|GO:0005975
Gso17g0237 449 Pfam Pectate lyase superfamily protein 39 96 IPR024535 -
Gso17g0237 449 Gene3D - 24 420 IPR012334 -
Gso17g0237 449 SMART pbh1 267 289 IPR006626 -
Gso17g0237 449 SMART pbh1 206 232 IPR006626 -
Gso17g0237 449 SMART pbh1 295 316 IPR006626 -
Gso17g0237 449 SMART pbh1 183 205 IPR006626 -
Gso17g0237 449 SMART pbh1 233 254 IPR006626 -
Gso17g0237 449 SUPERFAMILY Pectin lyase-like 32 429 IPR011050 -
Gso17g0237 449 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0237 Gso-Chr17 2180873 2183839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0237 3 436 Glycoside Hydrolase AT3G06770 63.699 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0237 - - gmx:100802343 904.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2064 7 44576221 44579215 Gso17g0237 17 2180873 2183839 GST
Gso17g0237 17 2180873 2183839 Gso15g1218 15 12147233 12150259 PCT
Gso17g0237 17 2180873 2183839 Gso9g0349 9 3358806 3361959 PCT
Gso15g1218 15 12147233 12150259 Gso17g0237 17 2180873 2183839 PCT
Gso9g0349 9 3358806 3361959 Gso17g0237 17 2180873 2183839 PCT