Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1218 ATGCTTGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAGTTAATGGAAATGGTGGGCAGTGTGGTTCCAACCCAAGACTAGACCCTAGACCTCACAGTGTCTCCATTTTGGAGTTTGGTGCAGTTGGAGATGGTAAAACACTCAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAGGGTGGGGCTCAGCTCTATGTTCCTCCGGGAAAATGGCTCACTGGAAGCTTCAATCTCACAAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGAACTCAGGATCCATCGCATTGGGATGTTGTTGAACCCTTGCCTTCTTATGGCCGAGGGCTTGAAGTTCCCGGGGGAAGATATCAGAGTTTGATAAATGGATACATGTTACATGATGTGGTCGTAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTATGGTGGGATTGGTATAGCACTCATTCCTTGAACCACAGTCGTCCTCATTTGGTTGAAATTGTGGCATCTGATTATGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCTTATAGCATACACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTATTGTTGCCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCTTATGGCAGGCCTACTGAGAATGTACACATCAGAAGGGTGCATCTACATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATGTTCTAGTGGAGCATGCTCATCTTTTCAACTCAAAAAGTGGCATTGAGTTCAGAACCACCAAGGGAAGAGGTGGTTATATGAAAGAAATTGTTATGTCAGACATACAAATGGAGAATGTCCACACAGCAATTGCTGCCACAGGTAATTGTGGGTCTCATCCTGATGACAAGTTTGATCCAAATGCACTCCCACATTTGGATCACATTACCTTGAAGGATGTCACAGGTACAAACATTTCCATTGCTGGAAACATAGCTGGAATAGAAGAATCCCCTTTCACAAACATATGCCTCTCCAACATAACCTTGTCCACAAATTCTGTTTCTCCAATTACTTGGGAATGCTCAAATGTGTCTGGTTTTTCAGACTCAGTGCTCCCAGAACCTTGTCCCGAACTTGGCAACCCCTCATATGATTCTTCCTCATCATGTTTCTACCTGCTGAGTGTCAGTGGCAAAACTGTAGTGCAGTGA 1359 0.4334 MLVALLLLVALSNAVRVNGNGGQCGSNPRLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWDWYSTHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSDNVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSKSGIEFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVTGTNISIAGNIAGIEESPFTNICLSNITLSTNSVSPITWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYLLSVSGKTVVQ* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1218 452 PANTHER PECTIN LYASE-RELATED 2 446 - -
Gso15g1218 452 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Gso15g1218 452 Gene3D - 26 418 IPR012334 -
Gso15g1218 452 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 446 - -
Gso15g1218 452 Pfam Glycosyl hydrolases family 28 135 414 IPR000743 GO:0004650|GO:0005975
Gso15g1218 452 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1218 Gso-Chr15 12147233 12150259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1218 1 440 Glycoside Hydrolase AT3G16850 63.265 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1218 - - gmx:100777503 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1218 15 12147233 12150259 Gso9g0349 9 3358806 3361959 GST
Gso7g2064 7 44576221 44579215 Gso15g1218 15 12147233 12150259 PCT
Gso17g0237 17 2180873 2183839 Gso15g1218 15 12147233 12150259 PCT
Gso15g1218 15 12147233 12150259 Gso7g2064 7 44576221 44579215 PCT
Gso15g1218 15 12147233 12150259 Gso17g0237 17 2180873 2183839 PCT