Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0222 ATGCTTGCAGAACAGAAATTCCAAAAGACATACCCGACAGTCACCGAGGTATTGGAAGAAGTAAGGAGAATGACAGACATAGGGTTCCCAATAGCAGCCATGAGTCTTGTGGGTTACCTCAAAAACATGACCTTAGTTGTGTGCATGGGAAGATTGGGAAGCCTGGAATTAGCCGGAGGTTCTTTGGCCATAGGCTTGACCAACATAACCGGTTACTCTGTCCTCTCAGGTCTAGCCATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTCGAAACTTGTCCTTACTCTCTCTAACTTTGCAGAGAACAATTCTCATGTTACTGCTATTTTCTCTCCCCATTTCTCTTCTTTGGCTCAACCTCGAATCTCTCATGCTATGCCTTCGCCAGAATCCAGACATAACCCGAGTAGCAACCCTCTATTGCCGCTTCGCAATTCCAGACCTCATTGCCAATAGCTTCCTCCACCCTCTTCGAATCTTCCTACGTAGTAAAGGCACAACTTGGCCACTGTTGTGGTGCACTTTACTATCCATTCTTCTACACCTTCCAACCCTCACTTTTCTAACCTTCAAACTTAACCTTGGCGTGCCGGGAATCGCTATCTCATCCTTTGTTGCCAATTTTAGCAACCTTTTCTTCCTTCTTTTGTACATGTTCTATACACGTGTCCCCAAGGAGTCCTTACACGTGTCTTTACTAATGTCACATAATAATTTAATAATAACATGTAGCAGCAGTACTAGTACTATTGCCAAGGAATGGGGTATGCTAATGAAATTTTCGATACAAAGTTGTCTAGCTGTTTGCTTGGAATGGTGGTGGTACGAGTTGATGACAATTTCAGCAGGTTACCTTGATAACCCTCGTGTTGCTCTAGCCACTGCTGGCATAGTGATACAAACCACGTCTCTTATGTACACTTTGCCAACGGCACTAAGTGCATCAGTGTCAACCAGAGTAGGAAATGAACTTGGAGCGGGGCAGGGTGAAAGGGCAAATTTGTCAACGGTGGTGGCAATAGGATTAGCACTTGTAAGCTCAATATTTGGTTTGTTGTGGACCACAATGGGAAGAGAAAGGTGGGGGAGAGTGTTCACTAGTGATAGCGAGGTGTTACAATTGACCGTGGCAGTGTTACCTATAATTGGACTGTGTGAGTTAGCCAATTGTCCGCAAACCACAAGCTGTGGAATCCTTAGAGGAAGTGCTAGGCCTGGTATTGGGGCTGTTATTAACTTTTGCTCATTTTACTTGGTAGGAGCACCAGTGGCAATTGTTTTAGCCTTCTATTGGAAACTCGGGATGGTTGGTCTGTGTTATGGGTTGCTGGCAGCACAAATCGCATGTGTGGTGTCAATTTTTGGTGTGGTATATAAGACTGATTGGGAAAGAGAGTCATTGAAGGCTAGATGCTTGGTGGGAAAGGCTTCATGTGGCACATTTGCATATGATGAGGACCAAACTGATGCACTCAAATGTGAAGAAGGTGTTGTCTTTCTCAACTCCCAAAAGTGA 1524 0.4501 MLAEQKFQKTYPTVTEVLEEVRRMTDIGFPIAAMSLVGYLKNMTLVVCMGRLGSLELAGGSLAIGLTNITGYSVLSGLAMGMEPLCTQAFGSRNLSLLSLTLQRTILMLLLFSLPISLLWLNLESLMLCLRQNPDITRVATLYCRFAIPDLIANSFLHPLRIFLRSKGTTWPLLWCTLLSILLHLPTLTFLTFKLNLGVPGIAISSFVANFSNLFFLLLYMFYTRVPKESLHVSLLMSHNNLIITCSSSTSTIAKEWGMLMKFSIQSCLAVCLEWWWYELMTISAGYLDNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQGERANLSTVVAIGLALVSSIFGLLWTTMGRERWGRVFTSDSEVLQLTVAVLPIIGLCELANCPQTTSCGILRGSARPGIGAVINFCSFYLVGAPVAIVLAFYWKLGMVGLCYGLLAAQIACVVSIFGVVYKTDWERESLKARCLVGKASCGTFAYDEDQTDALKCEEGVVFLNSQK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0222 507 PANTHER PROTEIN DETOXIFICATION 55 12 481 - -
Gso17g0222 507 Pfam MatE 267 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso17g0222 507 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Gso17g0222 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 481 - -
Gso17g0222 507 CDD MATE_eukaryotic 20 471 IPR045069 GO:0042910|GO:1990961
Gso17g0222 507 TIGRFAM matE: MATE efflux family protein 30 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0222 Gso-Chr17 2076378 2079287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0222 K03327 - gmx:100798616 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0222 17 2076378 2079287 Gso17g0222 17 2076378 2079287 ECH
Gso7g2080 7 44699328 44702006 Gso17g0222 17 2076378 2079287 GST
Gso17g0222 17 2076378 2079287 Gso9g0364 9 3591682 3594057 PCT
Gso9g0364 9 3591682 3594057 Gso17g0222 17 2076378 2079287 PCT