Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0200 ATGGAGGAACCGAGCAAACTGAAGCGTGCCATGATTGATTCCTGGGCTGGGGCAATTTCTGGTGGAATATCACGGACAGTTACCTCGCCCCTCGATGTTATTAAGATTCGATTCCAGGTTCAGCTAGAGCCCACATCTTCATGGGCTTTATTACGGAAGGATTTGGCTGCAGCATCAAAATACACTGGTATGTTTCAAGCAACCAAGGACATTCTTAGAGAAGAAGGCGTACAGGGGTTTTGGCGGGGAAATGTGCCGGCATTGCTCATGGTTATGCCATATACAGCTATACAATTTACAGTTTTACACAAGTTGAAGACTTTTGCCTCTGGTTCTTCCAAATCAGAGAATCACATTAATTTGAGCCCTTGTCTATCCTACCTCAGTGGGGCATTAGCTGGGTGTGCAGCTACATTAGGTTCTTATCCCTTTGATCTTCTCCGAACTATATTAGCTTCTCAAGGTGAACCAAAGGTATATCCAAACATGAGGTCTGCATTCATGGATATCATCCATACTCGTGGATTCCAAGGCTTGTATTCTGGATTATCGCCAACTTTAGTGGAGATTATACCTTATGCAGGCCTACAATTTGGCACATATGATACATTTAAGCGTTGGGGCATGGCTTGGAATCATAGATACTCCAACACTTCTGCAGAAGATAACCTCTCTAGCTTTCAGCTTTTCCTTTGTGGATTGGCAGCGGGAACATGTGCCAAGCTTGTCTGTCATCCACTAGATGTTGTCAAAAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATATGGAGCTCGAGTTGAGCATCGTGCATACAGGAATATGCCTGATGCCATGCAACGGATATTTCGATTAGAGGGTTGGGCTGGTCTGTACAAGGGGATAATTCCATCAACTGTCAAAGCTGCACCTGCTGGTGCTGTGACATTTGTTGCTTATGAATTGACATCAGATTGGTTAGAGTCCACTTTCAATTGA 984 0.44 MEEPSKLKRAMIDSWAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLAAASKYTGMFQATKDILREEGVQGFWRGNVPALLMVMPYTAIQFTVLHKLKTFASGSSKSENHINLSPCLSYLSGALAGCAATLGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIHTRGFQGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWGMAWNHRYSNTSAEDNLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYRNMPDAMQRIFRLEGWAGLYKGIIPSTVKAAPAGAVTFVAYELTSDWLESTFN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0200 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 121 207 IPR018108 -
Gso17g0200 327 Gene3D Mitochondrial carrier domain 5 325 IPR023395 -
Gso17g0200 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 108 IPR018108 -
Gso17g0200 327 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 3 326 - -
Gso17g0200 327 Pfam Mitochondrial carrier protein 124 207 IPR018108 -
Gso17g0200 327 Pfam Mitochondrial carrier protein 224 323 IPR018108 -
Gso17g0200 327 Pfam Mitochondrial carrier protein 14 109 IPR018108 -
Gso17g0200 327 SUPERFAMILY Mitochondrial carrier 8 316 IPR023395 -
Gso17g0200 327 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Gso17g0200 327 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Gso17g0200 327 PRINTS Mitochondrial carrier protein signature 83 103 IPR002067 GO:0055085
Gso17g0200 327 PRINTS Mitochondrial carrier protein signature 136 154 IPR002067 GO:0055085
Gso17g0200 327 PRINTS Mitochondrial carrier protein signature 180 198 IPR002067 GO:0055085
Gso17g0200 327 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Gso17g0200 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 321 IPR018108 -
Gso17g0200 327 PANTHER SOLUTE CARRIER FAMILY 25 3 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0200 Gso-Chr17 1874174 1877582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0200 1 327 Organic Solute Cotransporters AT3G21390 74.096 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0200 K15108 - gmx:100805353 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2103 7 44893089 44896468 Gso17g0200 17 1874174 1877582 GST
Gso17g0200 17 1874174 1877582 Gso15g1258 15 12770956 12775416 PCT
Gso17g0200 17 1874174 1877582 Gso9g0397 9 3864287 3868682 PCT
Gso15g1258 15 12770956 12775416 Gso17g0200 17 1874174 1877582 PCT
Gso9g0397 9 3864287 3868682 Gso17g0200 17 1874174 1877582 PCT