Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0196 ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAGGGATGGGATTTCATGCAGAAGGGCATCACCAAGCTCAAGAACATTCTAGAAGGCTTGCCCGAGCCTCAATTCAGCTCCGAGGACTACATGATGCTTTACACGACCATCTACAACATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAACAACTTTATGACAAGTATAAGGAGTCTTTTGAAGAGTACATCGTATCGACGGTATTGCCTTCTTTGAGAGAGAAGCACGATGAATTTATGTTGAGAGAACTTGTGAAGAGATGGGCGAACCATAAAATTATGGTTCGGTGGCTTTCTCGGTTCTTTCACTATTTGGATCGGTACTTTATTGCTCGGAGGTCACTTCCGCCCCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTTAGAGATGCAGTTATTTCACTTATTGATCAAGAACGGGAGGGAGAGCAGATTGATCGAGCTCTGTTAAAGAATGTATTAGACATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCCGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCGAATTGGATTCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGTAGCGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGTTGTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGAATGTTCAGGCTATTCTCTAAAATACCTCGAGGCTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTTACCACTGAAGGTATGGCTTTGGTGAAGCATGCTGAAGATGCAGCTAGCAACAAAAAGGCAGAGAAGAAGGATATCGTAGGTCTGCAGGAGCAGGTTTTTGTTCGCAAGGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAACGATTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTAAAGAGGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGCGCAGAACTGCTTGCCTCCTTCTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTAAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTCAAGCTGCTTGCCTATATTAGTGACAAAGACTTGTTTGCTGAATTTTATAGGAAGAAGCTTGCTCGAAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCACGAGCGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGACAGTTTACCTCAAAGATGGAAGGAATGGTTACAGATTTGACACTGGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCCAATGCAGACCCTGGCATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCTGCAGAAATGATAAGGTGTGTTGAAGTTTTCAAAGAATTTTATCAAACTAAAACGAAGCACAGAAAACTTACATGGATTTATTCCTTGGGTACGTGTAATATAAGTGGGAAATTTGACCCAAAAACCGTGGAGCTGATTGTTACAACCTACCAGGCTTCAGCATTACTGCTTTTTAATTCGTCTGATAGACTGAGTTACTCAGAGATAATGACTCAGTTAAACTTATCTGACGATGATGTTATTAGACTGCTCCATTCCTTATCATGTGCCAAGTACAAGATTCTCAACAAGGAGCCAAATACAAAAACAATATTGTCCACTGATTATTTTGAATTTAATTCCAAATTTACTGACAAAATGAGGAGAATCAAGATTCCTCTTCCTCCTGTGGATGAGAAGAAAAAGGTTATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGTAAAGTTTTGGGCTACCAACAATTAGTCATGGAGTGTGTTGAGCAGTTAGGTCGCATGTTTAAGCCTGACGTCAAGGCTATTAAAAAGCGGATTGAAGATTTGATTTCTCGTGACTACTTGGAAAGAGACAAAGATAATGCTAATATGTTCAAGTACTTGGCTTGA 2235 0.4009 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTTEGMALVKHAEDAASNKKAEKKDIVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFDPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTILSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0196 744 Pfam Cullin protein neddylation domain 674 736 IPR019559 -
Gso17g0196 744 Gene3D Cullin Repeats 142 264 - -
Gso17g0196 744 PANTHER CULLIN 2 743 IPR045093 -
Gso17g0196 744 SUPERFAMILY Cullin homology domain 388 657 IPR036317 -
Gso17g0196 744 Gene3D - 661 744 IPR036388 -
Gso17g0196 744 SMART cul_2 420 569 IPR016158 -
Gso17g0196 744 Gene3D Cullin Repeats 3 141 - -
Gso17g0196 744 Coils Coil 322 342 - -
Gso17g0196 744 SMART Cullin_Nedd8_2 671 738 IPR019559 -
Gso17g0196 744 Gene3D Cullin; Chain C, Domain 2 507 660 - -
Gso17g0196 744 ProSiteProfiles Cullin family profile. 389 619 IPR016158 -
Gso17g0196 744 Gene3D Cullin Repeats 390 503 - -
Gso17g0196 744 Pfam Cullin family 24 647 IPR001373 GO:0006511|GO:0031625
Gso17g0196 744 Gene3D Cullin Repeats 267 389 - -
Gso17g0196 744 SUPERFAMILY Cullin repeat-like 11 384 IPR016159 -
Gso17g0196 744 PANTHER CULLIN 3B 2 743 - -
Gso17g0196 744 SUPERFAMILY "Winged helix" DNA-binding domain 659 744 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0196 Gso-Chr17 1838066 1844874 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0196 K03347 - gmx:100793682 1483.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2107 7 44930621 44937338 Gso17g0196 17 1838066 1844874 GST
Gso17g0196 17 1838066 1844874 Gso15g1266 15 12863340 12875888 PCT
Gso15g0791 15 7224753 7236796 Gso17g0196 17 1838066 1844874 PCT
Gso11g2472 11 40795539 40809777 Gso17g0196 17 1838066 1844874 PCT
Gso15g1266 15 12863340 12875888 Gso17g0196 17 1838066 1844874 PCT