Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2472 ATGTCTCTCCCCACCAAACGGTCGAGCACCGCTGGTTCCTCCCTGTCGCCGCCACCTCCTATGAAAAAGGCCAAGTCCCTCCTCCTCCGCTCCTCCTCCGACGACCACGACGCCGTTTTGGACCCTTCCTCCATGCCTCTCGACGACGATCTCCCCAATGCCCGCGCCGCCAATCTCGCCCGCAAGAAAGCCACCCCGCCCCAACCCGCCAAGAAGCTCCTCATCAAGCTCCACAAAGCTAAACCAACATTGCCCACAAATTTCGAGGAGGATACATGGGCAAAACTAAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCTAACTCTTGTGACTTGGAGAAGCTTTATCAGGCTGTGAACGATCTCTGCCTTTATAAAATGGGTGGAAATCTTTATCAACGGATTGAAAAGGAGTGTGAAGCACATATATCTGCTGCACTGCAGTCTTTGGTTGGCCAAAGCCCAGATTTGGTTGTTTTTCTGTCTCTAGTTGAGAGATGTTGGCAGGATCTTTGTGACCAAATGTTGATGATTCGTGGTATAGCCTTGTATCTAGATAGGACATATGTGAAGCAAACAGCAAATGTCCGATCATTATGGGACATGGGCTTACAACTTTTCCGCAAACATCTTTCATTGTCTCCTGAAGTAGAACACAAAACTGTTACAGGTCTTCTACGAATGATTGAAAGTGAAAGAAAAGGTGAAGCAGTGGATAGAACTCTTCTAAACCACCTTTTGAAGATGTTTACTGCTCTGGGAATTTATGCAGAAAGCTTTGAGAAGCCATTCCTTGAATGCACATCTGAATTTTATGCTGCTGAAGGTGTGAAATACATGCAGCAATCAGATGTTCCAGATTACTTGAAGCATGTGGAGATACGATTGCAAGAAGAACATGAAAGATGTTTGATCTACTTGGATGCAAGTACTAGGAAGCCATTGATAGCAACAGCAGAAAAACAACTTCTTGAACGTCATATACCTGCCATTCTTGATAAGGGCTTTGCAATGCTTATGGATGGGAATCGTATTGAAGACCTTCAGAGAATGTACTCACTCTTTTCAAGGGTCAATGCCCTCGAGTCATTGAGGCAGGCCATTAGTTCATATATCAGGAGAACTGGTCAGGGCATTGTTTTGGACGAGGAGAAAGATAAGGATATGGTTTCATCCCTTTTGGAATTTAAGGCTTCTCTTGACACAACATGGGAAGAAAGCTTTTCCAAGAATGAAGCATTCTGTAACACCATCAAAGATTCGTTTGAGCATCTCATCAATCTTCGTCAGAACCGACCTGCTGAATTGATTGCCAAGTTTTTGGATGAGAAACTTCGTGCAGGTAACAAGGGCACTTCAGAAGAAGAGTTGGAGGGTACACTTGATAAAGTCCTTGTTTTATTCAGGTTCATTCAGGGCAAGGATGTGTTTGAGGCATTTTATAAGAAAGATCTTGCAAAAAGACTGTTGTTGGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGTTGAAGACCGAGTGTGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAGGACATTGAATTATCAAAAGAAATAAACGAGTCCTTCAAACAGTCATCCCAGGCTAGGACAAAACTCCCATCCGGGATTGAAATGAGTGTTCATGTTTTGACAACTGGGTACTGGACGTATCCACCCATGGATGTTAGACTTCCTCATGAATTGAATGTTTACCAGGATATTTTCAAAGAGTTCTATCTAAGTAAATATAGTGGAAGGCGTCTGATGTGGCAAAATTCATTAGGTCACTGTGTCTTAAAGGCAGAGTTTCCTAAAGGGAAAAAAGAGTTGGCTGTCTCCCTATTTCAGACTGTTGTTCTGATGTTATTCAATGATGCTGAGAAACTAAGCTTTCAAGATATCAAGGACTCTACTGGTATAGAGGACAAGGAACTGAGAAGGACTCTGCAATCACTTGCATGTGGAAAAGTTCGTGTCCTACAAAAGTTGCCAAAGGGTAGAGATGTGGAGGATGATGACTCATTTGTTTTTAATGAAGGGTTTACAGCTCCTCTTTATCGTATAAAGGTGAATGCAATTCAGTTGAAGGAGACAGTAGAGGAGAACACAAGCACCACTGAAAGAGTTTTCCAAGACCGTCAATATCAGGTTGATGCTGCTATTGTGAGGATAATGAAGACTAGGAAAGTGCTTAGTCACACGCTTCTTATTACTGAACTCTTCCAACAGCTCAAATTTCCAATAAAACCAGCTGACTTGAAGAAAAGGATCGAAAGCCTGATTGATAGGGAGTATCTGGAGAGAGACAAGAACAACCCTCAAATATACAATTACCTTGCATAA 2367 0.4254 MSLPTKRSSTAGSSLSPPPPMKKAKSLLLRSSSDDHDAVLDPSSMPLDDDLPNARAANLARKKATPPQPAKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPNSCDLEKLYQAVNDLCLYKMGGNLYQRIEKECEAHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERKGEAVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGVKYMQQSDVPDYLKHVEIRLQEEHERCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFAMLMDGNRIEDLQRMYSLFSRVNALESLRQAISSYIRRTGQGIVLDEEKDKDMVSSLLEFKASLDTTWEESFSKNEAFCNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQLKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2472 788 Gene3D Cullin Repeats 330 431 - -
Gso11g2472 788 Gene3D - 715 788 IPR036388 -
Gso11g2472 788 ProSiteProfiles Cullin family profile. 433 661 IPR016158 -
Gso11g2472 788 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g2472 788 Gene3D Cullin; Chain C, Domain 2 550 704 - -
Gso11g2472 788 SMART cul_2 463 611 IPR016158 -
Gso11g2472 788 PANTHER CULLIN-4A 51 788 - -
Gso11g2472 788 MobiDBLite consensus disorder prediction 28 43 - -
Gso11g2472 788 MobiDBLite consensus disorder prediction 1 51 - -
Gso11g2472 788 Pfam Cullin family 93 689 IPR001373 GO:0006511|GO:0031625
Gso11g2472 788 PANTHER CULLIN 51 788 IPR045093 -
Gso11g2472 788 SUPERFAMILY Cullin repeat-like 87 429 IPR016159 -
Gso11g2472 788 Gene3D Cullin Repeats 432 543 - -
Gso11g2472 788 SUPERFAMILY "Winged helix" DNA-binding domain 700 788 IPR036390 -
Gso11g2472 788 Pfam Cullin protein neddylation domain 720 780 IPR019559 -
Gso11g2472 788 Gene3D Cullin Repeats 215 328 - -
Gso11g2472 788 Gene3D Cullin Repeats 80 211 - -
Gso11g2472 788 ProSitePatterns Cullin family signature. 761 788 IPR016157 GO:0006511|GO:0031461|GO:0031625
Gso11g2472 788 SMART Cullin_Nedd8_2 717 782 IPR019559 -
Gso11g2472 788 SUPERFAMILY Cullin homology domain 430 699 IPR036317 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2472 Gso-Chr11 40795539 40809777 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2472 K10609 - gmx:100805491 1463.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0791 15 7224753 7236796 Gso11g2472 11 40795539 40809777 GST
Gso11g2472 11 40795539 40809777 Gso7g2107 7 44930621 44937338 PCT
Gso11g2472 11 40795539 40809777 Gso17g0196 17 1838066 1844874 PCT